EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00854 - PTR2)
POT family
(Pfam reference: accession no. PF00854)
(Interpro reference: accession no. IPR000109)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
25 sequences @ 518 aa
(ave. pairwise identity: 0.20)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 20.13)
nucleotides
(available for above)
24 sequences @ 1554 bp
(ave. pairwise identity: 0.36)
New Hampshire format
(total tree length: 13.05)
amino acids, restricted set
(corresp. to available nt seqs)
24 sequences @ 518 aa
(ave. pairwise identity: 0.20)
New Hampshire format
(total tree length: 19.91)