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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00825 alignment
(16 sequences with 134 aa)


RNPA_SYNY3/3-112 LPKTLRLKHWQDFQTVYQQGKRHRHSNLLMRVLGDRQAD-----...........----HSRFGITVSQKVSKKATVRNRLKRQIRAVINHFQPQIKPG-...FDVVIIVLPQGIGCNYERFLRELEQLFSQAG
RNPA_MYCCA/1-109 MKNKRVIKKNFEFQEIINYKK-TIKNFCFVIYYKDNEES-----...........----YLKYGISVGKK-IGNAVIRNKVKRQIRMILKQNISEIGTVS...KDIIILVRKSVLELKYATLSKLLIKLIKEIK
RNPA_BACSU/1-108 MKKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLDQPEND-----...........----ELRVGLSVSKK-IGNAVMRNRIKRLIRQAFLEEKERLKEK-...-DYIIIARKPASQLTYEETKKSLQHLFRKSS
RNPA_HELPY/13-140 SKPYDSLKNKSEFDRVYQKGFKKHNPFFSLFVLDLSQEPPKEKAgfkdplfcrlkDKKTLYLLGLSVSKK-VGNAVKRNLIKRRLRSLTLKHAALCQGL-...-ALVFVPRSDCYHLDFWALEKHFLEMLTSIK
RNPA_PSEPK/5-113 FSREKRLLTPRHFKAVFDSPTGKVPGKNLLILARENGLD-----...........----HPRLGLVIGKKSVKLAVQRNRLKRLMRDSFRLNQQLLAGL-...-DIVIVARKGLGEIENPELHQHFGKLWKRLA
RNPA_PROMI/6-113 FPRELRLLTPKHFNFVFQQPQ-RASSPEVTILGRQNELG-----...........----HPRIGLTIAKKNVKRAHERNRIKRLAREYFRLHQHQLPAM-...-DFVVLVRKGVAELDNHQLTEVLGKLWRRHC
RNPA_ECOLI/6-113 FPRELRLLTPSQFTFVFQQPQ-RAGTPQITILGRLNSLG-----...........----HPRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAM-...-DFVVVAKKGVADLDNRALSEALEKLWRRHC
RNPA_HAEIN/6-113 FSRELRLLTPIQFKNVFEQPF-RASTPEITILARKNNLE-----...........----HPRLGLTVAKKHLKRAHERNRIKRLVRESFRLSQHRLPAY-...-DFVFVAKNGIGKLDNNTFAQILEKLWQRHI
RNPA_BUCAP/6-113 FKKKSKLLKSTNFQYVFSNPC-NKNTFHINILGRSNLLG-----...........----HPRLGLSISRKNIKHAYRRNKIKRLIRETFRLLQHRLISM-...-DFVVIAKKNIVYLNNKKIVNILEYIWSNYQ
RNPA_COXBU/5-112 FSVGWRIRTTAEFRRIYAARQ-RIIGRYYLLYYRENEIK-----...........----HSRLGVVASKRNVRKAVWRNRVRRVVKEAFRIRKKDLPAF-...-DIVVVAKASSVEADNKELYECINKLFTQLE
RNPA_MYCPN/3-110 AKTKHHLRDRKVFAALLRSKR-RFFSTFLMAYFMPNRVR-----...........----TWRAAVSISKTKYKLAVERNLIRRQVKAIMREQFCNLNAV-...-DVLVIINQGFLELTFKEKQTIFLNLCQKLQ
RNPA_MYCGE/10-117 VKKSHSLRERKVFTTILQSKT-RFFGTFINAYFIKNNHS-----...........----TWRVAISIAKTKYKLAVQRNLIKRQIRSIFQQISNNLEPW-...-DILVIVNKGFIELTFKEKQKLFLQLLKRIK
RNPA_STRBI/2-118 LPTENRLRRREDFATAVRRGR-RAGRPLLVVHLRSGATDPHAPG...........ESAPPTRAGFVVSKA-VGGAVVRNQVKRRLRHLVCDRLSALPPG-...SLVVVRALPGAGDADHAQLARDLDAALQRLL
RNPA_MICLU/2-121 LPRDRRVRTPAEFRHLGRTGT-RAGRRTVVVSVATDPDQTRSTS...........PSAPRPRAGFVVSKA-VGNAVTRNRVKRRLRAVVAEQMR-LPPLRdlpVLVQVRALPAAAEADYALLRRETVGALGKAL
RNPA_MYCLE/2-110 LSACNRMRRSSEFDATVKFGL-RAVQSDVIIHVWRGCNRDETK-...........----APHVGLIIAKT-VGSAVERHRVARRLRHVARTMLGELGGA-...DQVVIRALPSSRNVSSAWLAQQLRNGLR---
RNPA_MYCTU/2-109 LRARNRMRRSADFETTVKHGM-RTVRSDMVVYWWRGSGG-----...........----GPRVGLIIAKS-VGSAVERHRVARRLRHVAGSIVKELHPS-...DHVVIRALPSSRHVSSARLEQQLRCGLRRAV