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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00814 phylogeny
for amino acid alignment


 
((((((((((((((((((Q8A997_BACTN/40-120,Q9F0V0_RIEAN/41-129),((Q8KGA4_CHLTE/38-118,(GCP_AQUAE/40-128,((Q8EUQ9_MYCPE/54-139,((GCP_MYCGE/43-127,GCP_MYCPN/43-124),Q9PQ78_UREPA/43-131)),((GCP_HELPY/40-129,Q9PMV5_CAMJE/43-124),Q98R92_MYCPU/39-125)))),((Q8D283_WIGBR/40-126,(GCP_BUCAI/40-125,GCP_BUCBP/41-127)),((Q83C88_COXBU/41-127,(Q8EHD6_SHEON/40-126,((Q87B17_XYLFT/44-129,Q88A57_PSESM/40-125),(Q8CZR6_YERPE/45-131,GCP_HAEIN/40-126)))),(Q82XN2_NITEU/40-124,(Q8XX97_RALSO/40-126,Q9JVV8_NEIMA/40-126)))))),(Q92JK6_RICCN/41-129,((Q8UC47_AGRT5/48-136,Q8FYI5_BRUSU/44-132),(Q89WW1_BRAJA/44-132,Q9ABZ9_CAUCR/52-137)))),(((GCP_STRCO/46-131,(GCP_MYCLE/52-138,Q8FS07_COREF/44-127)),Q8G4D1_BIFLO/42-127),((((GCP_SYNY3/40-128,(Q8DLI9_SYNEL/40-128,Q8Z0I6_ANASP/40-128)),(Q8F661_LEPIN/40-125,Q9X7I3_PROMA/45-130)),(Q9WXZ2_THEMA/40-126,Q83FV5_TROWT/40-120)),((((Q8Y5I7_LISMO/48-136,((GCP_BACSU/46-134,Q9KFD3_BACHD/49-137),Q81IS8_BACCR/49-137)),(Q8CNL9_STAEP/44-132,((Q831N0_ENTFA/48-136,((Q8DRH2_STRR6/43-131,Q8DXT9_STRA5/43-131),Q9CIR1_LACLA/43-131)),Q88YN0_LACPL/47-135))),Q8ESI6_OCEIH/49-137),((Q8RFX8_FUSNN/40-128,(Q8RC98_THETN/54-142,((Q891E7_CLOTE/44-132,Q97KL6_CLOAB/44-132),Q8XI89_CLOPE/43-131))),Q8GE05_HELMO/73-162))))),GCP_TREPA/40-128),((QRI7_YEAST/75-162,GCP_BORBU/39-127),(Q9Z8Z0_CHLPN/39-128,(Q822Y4_CHLCV/39-128,O84200_CHLTR/38-123)))),(O94710_SCHPO/85-174,(Q93170_CAEEL/62-151,((Q8BLB6_MOUSE/76-164,Q8JFR7_BRARE/64-152),(O22145_ARATH/123-212,Q9VWD6_DROME/64-151))))),((Q8ZV67_PYRAE/37-125,(Q975Q7_SULTO/40-128,Q9YCX7_AERPE/46-134)),((((O29153_ARCFU/36-122,(GCP_HALMA/44-139,Q9HNL6_HALN1/1-75)),((GCP_METJA/37-123,(Q978W6_THEVO/36-124,Q9HLA5_THEAC/36-124)),(Q8TVD4_METKA/38-126,(GCP_METTH/37-125,Q8PZ92_METMA/54-137)))),GCP_PYRHO/36-120),((((GCP_MOUSE/38-126,(O94637_SCHPO/46-134,YK18_YEAST/103-193)),(O49653_ARATH/42-130,Q9BL28_CAEEL/38-128)),Q9VV41_DROME/38-126),(Q8IJ99_PLAF7/52-140,Q8SQQ3_ENCCU/37-125))))),(Q9Z9F1_CHLPN/19-108,(Q823T4_CHLCV/19-108,O84347_CHLTR/17-106))),(((((Q82US9_NITEU/23-109,Q8XZM8_RALSO/24-109),((Q83BW6_COXBU/24-112,(Q886R7_PSESM/24-109,(Q87DD7_XYLFT/23-111,Q8P6N8_XANCP/23-111))),((Q8DFR6_VIBVU/25-110,Y388_HAEIN/26-111),(Q8EE04_SHEON/30-118,(Y301_BUCBP/25-111,(Y324_BUCAI/25-113,Y315_BUCAP/25-113)))))),Q9JW17_NEIMA/29-109),(O83846_TREPA/24-113,(Q8A679_BACTN/25-111,Q8KG29_CHLTE/23-103))),((((Q8RCA0_THETN/24-111,(Q8RF02_FUSNN/25-99,(Q8XIF6_CLOPE/24-109,(Q891D5_CLOTE/24-109,Q97FA1_CLOAB/24-104)))),(((((O05516_BACSU/24-110,Q81IT0_BACCR/24-112),Q8Y5I5_LISMO/23-106),Q9KFD5_BACHD/24-112),Q8ESI8_OCEIH/24-109),((Q8CNL7_STAEP/24-112,Q8NVJ3_STAAW/33-121),((Q88YN3_LACPL/24-112,Q831M7_ENTFA/36-124),((Q8DRH4_STRR6/24-108,((Q8DVT2_STRMU/24-109,Q8K5W9_STRP3/25-112),Q8DXT7_STRA5/25-112)),Q9CIR4_LACLA/24-112))))),(Q9WZX7_THEMA/22-102,Q8GDZ8_HELMO/24-112)),((Q9AC10_CAUCR/23-108,(Q92HF7_RICCN/24-114,((Q89W94_BRAJA/26-112,Q98BK6_RHILO/26-106),((Q8FXU7_BRUSU/58-141,Q8UIE5_AGRT5/26-113),Q9KII1_RHIME/26-110)))),(Q9RWB3_DEIRA/34-121,(((Y378_MYCLE/29-114,(Q8FS09_COREF/26-111,Q8NSS6_CORGL/26-111)),(Q82DK4_STRAW/24-108,Q83FV4_TROWT/27-103)),Q8G4D3_BIFLO/201-275)))))),((Q8DMP9_SYNEL/2-97,P72633_SYNY3/28-122),(Q9PHP5_CAMJE/425-493,(O24889_HELPY/442-514,(((Q8KX20_SYNP2/429-505,(HYPF_SYNY3/427-496,Q8EF91_SHEON/452-537)),((Q8GE55_HELMO/446-519,Q8FEN3_ECOL6/444-514),(((Q97KV6_CLOAB/425-494,Q8RDB0_THETN/428-501),(Q8YYZ7_ANASP/437-510,Q9AGW5_NOSPU/433-506)),(((Q81BC7_BACCR/438-511,Q8GGQ6_STRAZ/438-511),Q8KBJ0_CHLTE/442-514),((HYPF_RHILV/428-500,(Q89EX5_BRAJA/428-500,Q9ANP2_BRAJA/177-249)),((Q825T2_STRAW/444-515,(((HYPF_RHOCA/417-491,Q9X7M0_RHOSH/437-507),Q93TY4_THIRO/457-531),HYPF_AZOVI/446-522)),(HYF2_ALCEU/456-532,HYF1_ALCEU/41-117))))))),(((O28905_ARCFU/408-486,((O58636_PYRHO/427-504,Q8TXL4_METKA/431-510),(O27348_METTH/392-466,Y713_METJA/435-510))),(Q60190_METMA/429-500,Q8TII8_METAC/429-500)),O66902_AQUAE/426-499)))))),Q8F9Z8_LEPIN/35-119),(O51203_BORBU/23-106,O66494_AQUAE/24-100)),Q98R91_MYCPU/26-112),(O25691_HELPY/6-87,Q9PIZ4_CAMJE/9-84)),Q9PQH9_UREPA/27-116),Q8EWS2_MYCPE/28-114),Y208_MYCGE/31-117,Y208_MYCPN/31-117);
((((((((((((((((((Q8A997_BACTN/40-120:0.23359,Q9F0V0_RIEAN/41-129:0.22658):0.22449,((Q8KGA4_CHLTE/38-118:0.41591,(GCP_AQUAE/40-128:0.40643,((Q8EUQ9_MYCPE/54-139:0.31870,((GCP_MYCGE/43-127:0.26790,GCP_MYCPN/43-124:0.05631):0.29627,Q9PQ78_UREPA/43-131:0.35618):0.15096):0.20321,((GCP_HELPY/40-129:0.39274,Q9PMV5_CAMJE/43-124:0.25921):0.39305,Q98R92_MYCPU/39-125:0.53218):0.16305):0.08829):0.05047):0.06344,((Q8D283_WIGBR/40-126:0.29852,(GCP_BUCAI/40-125:0.28130,GCP_BUCBP/41-127:0.29372):0.14643):0.21143,((Q83C88_COXBU/41-127:0.23875,(Q8EHD6_SHEON/40-126:0.12397,((Q87B17_XYLFT/44-129:0.19410,Q88A57_PSESM/40-125:0.17495):0.08151,(Q8CZR6_YERPE/45-131:0.11212,GCP_HAEIN/40-126:0.12780):0.07183):0.04007):0.05894):0.12040,(Q82XN2_NITEU/40-124:0.31895,(Q8XX97_RALSO/40-126:0.16679,Q9JVV8_NEIMA/40-126:0.28082):0.08829):0.08991):0.11006):0.13431):0.06727):0.08663,(Q92JK6_RICCN/41-129:0.31617,((Q8UC47_AGRT5/48-136:0.15372,Q8FYI5_BRUSU/44-132:0.11041):0.08523,(Q89WW1_BRAJA/44-132:0.20536,Q9ABZ9_CAUCR/52-137:0.35712):0.18879):0.16128):0.29414):0.03303,(((GCP_STRCO/46-131:0.12937,(GCP_MYCLE/52-138:0.22516,Q8FS07_COREF/44-127:0.18931):0.25355):0.10162,Q8G4D1_BIFLO/42-127:0.35630):0.17958,((((GCP_SYNY3/40-128:0.21389,(Q8DLI9_SYNEL/40-128:0.18339,Q8Z0I6_ANASP/40-128:0.17866):0.08428):0.04947,(Q8F661_LEPIN/40-125:0.63016,Q9X7I3_PROMA/45-130:0.41210):0.19148):0.19272,(Q9WXZ2_THEMA/40-126:0.45098,Q83FV5_TROWT/40-120:0.44187):0.13941):0.17875,((((Q8Y5I7_LISMO/48-136:0.12643,((GCP_BACSU/46-134:0.14440,Q9KFD3_BACHD/49-137:0.18487):0.02283,Q81IS8_BACCR/49-137:0.08748):0.03619):0.01634,(Q8CNL9_STAEP/44-132:0.25310,((Q831N0_ENTFA/48-136:0.08587,((Q8DRH2_STRR6/43-131:0.08582,Q8DXT9_STRA5/43-131:0.19886):0.04621,Q9CIR1_LACLA/43-131:0.26811):0.07394):0.08105,Q88YN0_LACPL/47-135:0.08413):0.20584):0.06871):0.05741,Q8ESI6_OCEIH/49-137:0.09092):0.12468,((Q8RFX8_FUSNN/40-128:0.26081,(Q8RC98_THETN/54-142:0.26168,((Q891E7_CLOTE/44-132:0.10109,Q97KL6_CLOAB/44-132:0.13838):0.07027,Q8XI89_CLOPE/43-131:0.07257):0.11337):0.11769):0.06551,Q8GE05_HELMO/73-162:0.27903):0.07606):0.09373):0.06382):0.05239):0.02130,GCP_TREPA/40-128:0.60480):0.10078,((QRI7_YEAST/75-162:0.61386,GCP_BORBU/39-127:0.41021):0.08725,(Q9Z8Z0_CHLPN/39-128:0.21343,(Q822Y4_CHLCV/39-128:0.12183,O84200_CHLTR/38-123:0.28835):0.03356):0.19592):0.09221):0.09560,(O94710_SCHPO/85-174:0.54582,(Q93170_CAEEL/62-151:0.46651,((Q8BLB6_MOUSE/76-164:0.15136,Q8JFR7_BRARE/64-152:0.27962):0.21292,(O22145_ARATH/123-212:0.60618,Q9VWD6_DROME/64-151:0.48084):0.09984):0.22249):0.15330):0.24345):0.10522,((Q8ZV67_PYRAE/37-125:0.44121,(Q975Q7_SULTO/40-128:0.33200,Q9YCX7_AERPE/46-134:0.38608):0.05620):0.15353,((((O29153_ARCFU/36-122:0.29655,(GCP_HALMA/44-139:0.19820,Q9HNL6_HALN1/1-75:0.10434):0.34730):0.05543,((GCP_METJA/37-123:0.21829,(Q978W6_THEVO/36-124:0.20051,Q9HLA5_THEAC/36-124:0.32154):0.18937):0.07160,(Q8TVD4_METKA/38-126:0.40760,(GCP_METTH/37-125:0.23189,Q8PZ92_METMA/54-137:0.28417):0.05555):0.06596):0.06809):0.07497,GCP_PYRHO/36-120:0.29024):0.06601,((((GCP_MOUSE/38-126:0.25201,(O94637_SCHPO/46-134:0.21073,YK18_YEAST/103-193:0.16040):0.03670):0.14217,(O49653_ARATH/42-130:0.29961,Q9BL28_CAEEL/38-128:0.24574):0.09895):0.05466,Q9VV41_DROME/38-126:0.14364):0.10717,(Q8IJ99_PLAF7/52-140:0.55649,Q8SQQ3_ENCCU/37-125:0.26863):0.05451):0.34555):0.00000):0.63127):0.36461,(Q9Z9F1_CHLPN/19-108:0.07921,(Q823T4_CHLCV/19-108:0.21288,O84347_CHLTR/17-106:0.34748):0.07997):0.88365):0.00000,(((((Q82US9_NITEU/23-109:0.29516,Q8XZM8_RALSO/24-109:0.54870):0.09101,((Q83BW6_COXBU/24-112:0.46996,(Q886R7_PSESM/24-109:0.25548,(Q87DD7_XYLFT/23-111:0.15914,Q8P6N8_XANCP/23-111:0.12757):0.37242):0.08932):0.09058,((Q8DFR6_VIBVU/25-110:0.14618,Y388_HAEIN/26-111:0.39105):0.12497,(Q8EE04_SHEON/30-118:0.33486,(Y301_BUCBP/25-111:0.52525,(Y324_BUCAI/25-113:0.28322,Y315_BUCAP/25-113:0.13726):0.23413):0.28550):0.06286):0.12476):0.11378):0.12470,Q9JW17_NEIMA/29-109:0.75907):0.13292,(O83846_TREPA/24-113:1.23781,(Q8A679_BACTN/25-111:0.86085,Q8KG29_CHLTE/23-103:0.49549):0.09184):0.13683):0.09480,((((Q8RCA0_THETN/24-111:0.22467,(Q8RF02_FUSNN/25-99:0.53313,(Q8XIF6_CLOPE/24-109:0.12554,(Q891D5_CLOTE/24-109:0.19376,Q97FA1_CLOAB/24-104:0.11628):0.12920):0.26329):0.08255):0.06561,(((((O05516_BACSU/24-110:0.32224,Q81IT0_BACCR/24-112:0.11725):0.06145,Q8Y5I5_LISMO/23-106:0.26128):0.04753,Q9KFD5_BACHD/24-112:0.19090):0.09572,Q8ESI8_OCEIH/24-109:0.23239):0.12785,((Q8CNL7_STAEP/24-112:0.19758,Q8NVJ3_STAAW/33-121:0.19100):0.26556,((Q88YN3_LACPL/24-112:0.32814,Q831M7_ENTFA/36-124:0.26322):0.08983,((Q8DRH4_STRR6/24-108:0.18090,((Q8DVT2_STRMU/24-109:0.18669,Q8K5W9_STRP3/25-112:0.25399):0.08811,Q8DXT7_STRA5/25-112:0.17431):0.06810):0.06520,Q9CIR4_LACLA/24-112:0.36645):0.07500):0.06533):0.11084):0.21291):0.15046,(Q9WZX7_THEMA/22-102:0.93828,Q8GDZ8_HELMO/24-112:0.51359):0.07327):0.20380,((Q9AC10_CAUCR/23-108:0.54234,(Q92HF7_RICCN/24-114:0.92994,((Q89W94_BRAJA/26-112:0.36251,Q98BK6_RHILO/26-106:0.35625):0.09748,((Q8FXU7_BRUSU/58-141:0.29238,Q8UIE5_AGRT5/26-113:0.32508):0.13942,Q9KII1_RHIME/26-110:0.33671):0.19493):0.12331):0.00000):0.14390,(Q9RWB3_DEIRA/34-121:1.04145,(((Y378_MYCLE/29-114:0.38618,(Q8FS09_COREF/26-111:0.16929,Q8NSS6_CORGL/26-111:0.11884):0.15386):0.21683,(Q82DK4_STRAW/24-108:0.44601,Q83FV4_TROWT/27-103:0.91937):0.21107):0.10226,Q8G4D3_BIFLO/201-275:0.74132):0.13822):0.17965):0.07564):0.11475):0.19916):0.13041,((Q8DMP9_SYNEL/2-97:0.52798,P72633_SYNY3/28-122:0.55663):0.64227,(Q9PHP5_CAMJE/425-493:0.83420,(O24889_HELPY/442-514:0.45485,(((Q8KX20_SYNP2/429-505:0.30471,(HYPF_SYNY3/427-496:0.25532,Q8EF91_SHEON/452-537:0.58520):0.18519):0.07874,((Q8GE55_HELMO/446-519:0.77137,Q8FEN3_ECOL6/444-514:0.68661):0.11723,(((Q97KV6_CLOAB/425-494:0.49557,Q8RDB0_THETN/428-501:0.30709):0.13496,(Q8YYZ7_ANASP/437-510:0.15106,Q9AGW5_NOSPU/433-506:0.12965):0.44274):0.15648,(((Q81BC7_BACCR/438-511:0.26472,Q8GGQ6_STRAZ/438-511:0.54202):0.08616,Q8KBJ0_CHLTE/442-514:0.57280):0.15954,((HYPF_RHILV/428-500:0.36342,(Q89EX5_BRAJA/428-500:0.11489,Q9ANP2_BRAJA/177-249:0.24374):0.25383):0.07925,((Q825T2_STRAW/444-515:0.59990,(((HYPF_RHOCA/417-491:0.20677,Q9X7M0_RHOSH/437-507:0.30829):0.27266,Q93TY4_THIRO/457-531:0.32763):0.25117,HYPF_AZOVI/446-522:0.26224):0.07950):0.08604,(HYF2_ALCEU/456-532:0.18070,HYF1_ALCEU/41-117:0.47400):0.23637):0.10300):0.15593):0.15884):0.05330):0.07032):0.14703,(((O28905_ARCFU/408-486:0.44780,((O58636_PYRHO/427-504:0.39144,Q8TXL4_METKA/431-510:0.50519):0.14070,(O27348_METTH/392-466:0.43501,Y713_METJA/435-510:0.28707):0.17946):0.16562):0.16833,(Q60190_METMA/429-500:0.04748,Q8TII8_METAC/429-500:0.23132):0.44027):0.27733,O66902_AQUAE/426-499:0.31076):0.19355):0.17587):0.18847):1.80901):0.06617):0.19456,Q8F9Z8_LEPIN/35-119:1.15613):0.13823,(O51203_BORBU/23-106:0.83399,O66494_AQUAE/24-100:0.70371):0.02613):0.21272,Q98R91_MYCPU/26-112:0.88689):0.00000,(O25691_HELPY/6-87:0.79291,Q9PIZ4_CAMJE/9-84:0.32995):0.58914):0.65279,Q9PQH9_UREPA/27-116:0.45224):0.24907,Q8EWS2_MYCPE/28-114:0.85934):0.57452,Y208_MYCGE/31-117:0.23851,Y208_MYCPN/31-117:0.14356);