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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00754 phylogeny
for amino acid alignment


 
(((((((((((((((Q8EY56_LEPIN/147-276,Q8AAM3_BACTN/320-455),((Q9VM55_DROME/681-809,Q9VM55_DROME/1150-1276),((SSPO_BOVIN/357-499,Q8CG65_MOUSE/1949-2082),(((O35407_MOUSE/47-183,DDR2_HUMAN/45-182),((Q17305_CAEBR/10-147,Q95ZV6_CAEEL/10-148),(Q9VMF8_DROME/6-126,Q9VMG2_DROME/5-136))),((((CNTP1_MOUSE/38-166,((Q86YZ7_HUMAN/18-149,Q8WYK1_HUMAN/42-171),CNTP2_HUMAN/47-178)),((HMCT_BOMMO/959-1092,Q9U5D0_DROME/2092-2222),((DISA_DICDI/16-149,DIS2_DICDI/17-151),Q86A91_DICDI/19-152))),((HMCT_BOMMO/1132-1251,Q9U5D0_DROME/2270-2401),(((O76470_LYTVA/553-687,O76470_LYTVA/714-850),((O76470_LYTVA/394-527,O76470_LYTVA/234-368),O76470_LYTVA/74-207)),(O88442_MOUSE/390-528,(Q8N2E1_HUMAN/129-271,CPXM2_HUMAN/150-290))))),((Q8IQH0_DROME/154-264,(XLRS1_HUMAN/80-216,XLRS1_FUGRU/136-272)),((DCBD2_MOUSE/304-443,DCBD1_HUMAN/266-409),(((NRP2_RAT/449-589,(NRP1A_BRARE/444-578,(NRP1_HUMAN/446-580,NRP1_XENLA/446-581))),(NRP2_RAT/292-424,(NRP1A_BRARE/288-419,(NRP1_HUMAN/290-421,NRP1_XENLA/290-421)))),((Q804W6_FUGRU/1494-1630,(((O18806_CANFA/2200-2334,FA8_PIG/1990-2124),FA8_MOUSE/2176-2310),Q804X3_CHICK/1234-1368)),(((O88783_MOUSE/2040-2177,Q804X4_CHICK/601-737),(Q804W5_FUGRU/1659-1796,Q8AYE0_BRARE/264-401)),(((EDIL3_MOUSE/173-311,((MFGM_MOUSE/163-300,(O77718_HORSE/90-227,MFGM_PIG/106-244)),MFGM_HUMAN/85-222)),((((O88783_MOUSE/1881-2017,FA5_BOVIN/1909-2045),Q804X4_CHICK/446-578),(Q804W5_FUGRU/1506-1636,Q8AYE0_BRARE/110-241)),(Q804W6_FUGRU/1335-1471,(O18806_CANFA/2047-2177,Q804X3_CHICK/1081-1211)))),(EDIL3_MOUSE/334-473,(MFGM_HUMAN/245-384,(O77718_HORSE/228-363,(MFGM_MOUSE/323-460,MFGM_BOVIN/285-424))))))))))))))),Q8LEV3_ARATH/665-802),Q8G7T8_BIFLO/1041-1166),(Q8G7T8_BIFLO/1181-1327,((Q8XKW3_CLOPE/647-777,(Q8XM09_CLOPE/660-774,Q8XM09_CLOPE/904-1022)),NAGH_CLOPE/809-941))),((Q84ID8_BACFR/596-744,(Q8XM24_CLOPE/1512-1625,Q8XM24_CLOPE/934-1060)),(Q89ZT1_BACTN/454-596,Q89ZV1_BACTN/445-586))),(((((Q8XLJ5_CLOPE/1646-1780,(Q8XL08_CLOPE/630-763,(Q8XKN0_CLOPE/1105-1231,Q8XM24_CLOPE/1372-1498))),(NANH_CLOSE/57-181,Q8XMY5_CLOPE/54-176)),(Q89YL8_BACTN/467-577,((((Q8XKX8_CLOPE/1228-1357,(Q8DR60_STRR6/1492-1622,(Q8G712_BIFLO/1548-1687,Q9F4D5_9BIFI/1344-1477))),(Q8VPE8_9ACTO/1329-1462,Q9AJR8_ERYRH/848-975)),Q9L448_ARTSP/1108-1239),(((O86617_STRCO/1208-1338,NANH_MICVI/510-641),((GAOA_DACDE/56-184,Q81DE5_BACCR/514-649),Q8A2L2_BACTN/1283-1415)),(Q8A2L2_BACTN/1144-1270,Q8A0H1_BACTN/1209-1337))))),(((Q8A089_BACTN/254-385,(Q8A0I1_BACTN/312-440,(Q89YU9_BACTN/305-435,Q8A9F0_BACTN/303-432))),Q8A5P4_BACTN/178-309),(((Q89ZU9_BACTN/236-363,Q89ZX7_BACTN/139-266),Q8A3D9_BACTN/234-362),(Q833V2_ENTFA/989-1120,Q8XLJ5_CLOPE/962-1091)))),(Q8PB72_XANCP/506-635,Q8A8W7_BACTN/192-294))),(((((Q8A085_BACTN/484-599,Q8A7A0_BACTN/484-599),Q870R5_NEUCR/66-192),((Q87BJ0_XYLFT/190-304,Q8P8N7_XANCP/189-303),Q9X5U5_STRLA/830-933)),((((Q8XM72_CLOPE/697-828,Q9KER4_BACHD/757-860),((((Q88ZW2_LACPL/814-938,Q8G4P3_BIFLO/800-927),Q8XNP3_CLOPE/805-929),Q8A192_BACTN/1068-1195),Q9CFI5_LACLA/212-334)),((Q9RK44_STRCO/638-748,((((Q82M60_STRAW/195-344,(Q8A0E7_BACTN/763-877,Q8A515_BACTN/721-836)),Q82M60_STRAW/58-175),(Q8A3U9_BACTN/732-846,((Q93IE7_9BACL/536-655,Q93IE7_9BACL/671-792),((Q82PL5_STRAW/627-750,Q82PL5_STRAW/767-871),(O87851_STRCO/467-585,(Q82NF0_STRAW/70-184,(Q8XT36_RALSO/351-470,(Q9RK65_STRCO/37-151,Q9RK65_STRCO/176-290)))))))),(Q9L448_ARTSP/42-172,Q9L448_ARTSP/190-323))),((((P75020_STRLI/512-638,Q9FC46_STRCO/200-323),Q82MD7_STRAW/593-719),((P75020_STRLI/46-169,Q9FC46_STRCO/49-177),P75020_STRLI/186-309)),(Q8XKN0_CLOPE/40-168,Q8XKN0_CLOPE/195-319)))),((Q8CKA9_YERPE/32-154,(Q82N96_STRAW/776-894,Q82N96_STRAW/1004-1123)),((Q8A1J9_BACTN/343-458,(Q8XSJ7_RALSO/1111-1228,Q8XSJ7_RALSO/1247-1364)),Q82ZM8_ENTFA/46-157)))),Q8QKV2_9PHYC/417-531)),(O52800_AMYOR/809-933,((Q8A0N3_BACTN/318-438,(Q89YM0_BACTN/197-314,Q8F329_LEPIN/56-173)),(((Q8A0R5_BACTN/336-456,Q9PH40_XYLFA/342-448),((Q8A5P6_BACTN/354-473,Q89YL8_BACTN/313-434),Q8XJ85_CLOPE/367-474)),Q8XNF8_CLOPE/258-365)))),Q8XK80_CLOPE/781-905),((Q8XKW1_CLOPE/75-206,Q8XKW1_CLOPE/300-428),((Q8IK83_PLAF7/305-420,(Q8IKS0_PLAF7/297-426,Q8T5Z6_PLABE/298-418)),Q8XM24_CLOPE/39-159))),((Q8CY62_STRR6/617-739,Q8CY62_STRR6/906-1032),Q8CY62_STRR6/765-890)),((Q9I925_ANGJA/49-179,Q9I927_ANGJA/48-180),Q9I926_ANGJA/48-177)),Q8AVL6_XENLA/176-299),Q8AVL6_XENLA/33-157,Q8AVL6_XENLA/315-439);
(((((((((((((((Q8EY56_LEPIN/147-276:1.16200,Q8AAM3_BACTN/320-455:1.49912):0.26241,((Q9VM55_DROME/681-809:0.79089,Q9VM55_DROME/1150-1276:0.96157):0.42967,((SSPO_BOVIN/357-499:0.52598,Q8CG65_MOUSE/1949-2082:0.60955):0.51228,(((O35407_MOUSE/47-183:0.39362,DDR2_HUMAN/45-182:0.20350):0.34056,((Q17305_CAEBR/10-147:0.24705,Q95ZV6_CAEEL/10-148:0.41902):0.20813,(Q9VMF8_DROME/6-126:0.19083,Q9VMG2_DROME/5-136:0.14599):0.50190):0.28485):0.40591,((((CNTP1_MOUSE/38-166:0.66009,((Q86YZ7_HUMAN/18-149:0.21162,Q8WYK1_HUMAN/42-171:0.15924):0.19341,CNTP2_HUMAN/47-178:0.17023):0.20214):0.49017,((HMCT_BOMMO/959-1092:0.41214,Q9U5D0_DROME/2092-2222:0.65119):0.31693,((DISA_DICDI/16-149:0.47680,DIS2_DICDI/17-151:0.24879):0.07832,Q86A91_DICDI/19-152:0.41754):0.60966):0.07191):0.06614,((HMCT_BOMMO/1132-1251:0.47836,Q9U5D0_DROME/2270-2401:0.64984):0.48502,(((O76470_LYTVA/553-687:0.30525,O76470_LYTVA/714-850:0.39895):0.17256,((O76470_LYTVA/394-527:0.42190,O76470_LYTVA/234-368:0.43750):0.08012,O76470_LYTVA/74-207:0.33905):0.06060):0.11369,(O88442_MOUSE/390-528:0.27400,(Q8N2E1_HUMAN/129-271:0.46441,CPXM2_HUMAN/150-290:0.15953):0.07395):0.53063):0.08430):0.05768):0.18048,((Q8IQH0_DROME/154-264:0.77230,(XLRS1_HUMAN/80-216:0.19104,XLRS1_FUGRU/136-272:0.06711):0.67010):0.03645,((DCBD2_MOUSE/304-443:0.39590,DCBD1_HUMAN/266-409:0.58926):0.27798,(((NRP2_RAT/449-589:0.47331,(NRP1A_BRARE/444-578:0.25938,(NRP1_HUMAN/446-580:0.18307,NRP1_XENLA/446-581:0.12765):0.10985):0.22743):0.47078,(NRP2_RAT/292-424:0.31302,(NRP1A_BRARE/288-419:0.22582,(NRP1_HUMAN/290-421:0.12399,NRP1_XENLA/290-421:0.21549):0.09675):0.19423):0.30950):0.15332,((Q804W6_FUGRU/1494-1630:0.40088,(((O18806_CANFA/2200-2334:0.10895,FA8_PIG/1990-2124:0.15272):0.06784,FA8_MOUSE/2176-2310:0.08725):0.14161,Q804X3_CHICK/1234-1368:0.25163):0.15665):0.24134,(((O88783_MOUSE/2040-2177:0.21638,Q804X4_CHICK/601-737:0.27258):0.13134,(Q804W5_FUGRU/1659-1796:0.23558,Q8AYE0_BRARE/264-401:0.25160):0.20309):0.15452,(((EDIL3_MOUSE/173-311:0.30751,((MFGM_MOUSE/163-300:0.10376,(O77718_HORSE/90-227:0.12037,MFGM_PIG/106-244:0.10803):0.07801):0.06160,MFGM_HUMAN/85-222:0.30599):0.27532):0.24435,((((O88783_MOUSE/1881-2017:0.20466,FA5_BOVIN/1909-2045:0.14696):0.27978,Q804X4_CHICK/446-578:0.20279):0.16339,(Q804W5_FUGRU/1506-1636:0.27928,Q8AYE0_BRARE/110-241:0.25846):0.22181):0.11387,(Q804W6_FUGRU/1335-1471:0.48450,(O18806_CANFA/2047-2177:0.15341,Q804X3_CHICK/1081-1211:0.21934):0.19121):0.09384):0.29960):0.16296,(EDIL3_MOUSE/334-473:0.30343,(MFGM_HUMAN/245-384:0.12990,(O77718_HORSE/228-363:0.10518,(MFGM_MOUSE/323-460:0.21021,MFGM_BOVIN/285-424:0.11368):0.04347):0.09372):0.20829):0.17917):0.06822):0.09646):0.10741):0.04572):0.04257):0.06562):0.14234):0.20972):0.29201):0.33464):0.18481,Q8LEV3_ARATH/665-802:1.48313):0.09435,Q8G7T8_BIFLO/1041-1166:1.36376):0.11715,(Q8G7T8_BIFLO/1181-1327:1.24005,((Q8XKW3_CLOPE/647-777:0.81248,(Q8XM09_CLOPE/660-774:1.03498,Q8XM09_CLOPE/904-1022:0.49922):0.35533):0.36344,NAGH_CLOPE/809-941:0.68915):0.35240):0.15892):0.09035,((Q84ID8_BACFR/596-744:1.35526,(Q8XM24_CLOPE/1512-1625:0.76240,Q8XM24_CLOPE/934-1060:1.00857):0.20477):0.09694,(Q89ZT1_BACTN/454-596:0.43206,Q89ZV1_BACTN/445-586:0.55669):1.11065):0.17574):0.05034,(((((Q8XLJ5_CLOPE/1646-1780:0.49524,(Q8XL08_CLOPE/630-763:0.44223,(Q8XKN0_CLOPE/1105-1231:0.20445,Q8XM24_CLOPE/1372-1498:0.23607):0.28926):0.12243):0.19585,(NANH_CLOSE/57-181:0.61746,Q8XMY5_CLOPE/54-176:0.37953):0.25078):0.15672,(Q89YL8_BACTN/467-577:1.28028,((((Q8XKX8_CLOPE/1228-1357:0.83102,(Q8DR60_STRR6/1492-1622:0.89927,(Q8G712_BIFLO/1548-1687:0.63972,Q9F4D5_9BIFI/1344-1477:0.61080):0.06293):0.21277):0.09564,(Q8VPE8_9ACTO/1329-1462:0.77354,Q9AJR8_ERYRH/848-975:0.88102):0.39495):0.11360,Q9L448_ARTSP/1108-1239:0.85768):0.10108,(((O86617_STRCO/1208-1338:0.58700,NANH_MICVI/510-641:0.63358):0.14720,((GAOA_DACDE/56-184:0.57306,Q81DE5_BACCR/514-649:0.61511):0.12008,Q8A2L2_BACTN/1283-1415:0.82708):0.11459):0.19174,(Q8A2L2_BACTN/1144-1270:0.65687,Q8A0H1_BACTN/1209-1337:0.42509):0.06882):0.10244):0.07137):0.08974):0.10480,(((Q8A089_BACTN/254-385:0.63556,(Q8A0I1_BACTN/312-440:0.76869,(Q89YU9_BACTN/305-435:0.73980,Q8A9F0_BACTN/303-432:0.24734):0.25420):0.14083):0.07815,Q8A5P4_BACTN/178-309:0.97173):0.39415,(((Q89ZU9_BACTN/236-363:0.64890,Q89ZX7_BACTN/139-266:0.60011):0.51334,Q8A3D9_BACTN/234-362:0.41211):0.49599,(Q833V2_ENTFA/989-1120:0.81126,Q8XLJ5_CLOPE/962-1091:0.92124):0.14003):0.14297):0.06212):0.18832,(Q8PB72_XANCP/506-635:1.31754,Q8A8W7_BACTN/192-294:1.29152):0.12218):0.10640):0.10973,(((((Q8A085_BACTN/484-599:0.25873,Q8A7A0_BACTN/484-599:0.07082):0.93837,Q870R5_NEUCR/66-192:0.79925):0.22959,((Q87BJ0_XYLFT/190-304:0.12547,Q8P8N7_XANCP/189-303:0.23564):0.96264,Q9X5U5_STRLA/830-933:0.76476):0.25143):0.27219,((((Q8XM72_CLOPE/697-828:0.64019,Q9KER4_BACHD/757-860:0.56355):0.16728,((((Q88ZW2_LACPL/814-938:0.36906,Q8G4P3_BIFLO/800-927:0.38940):0.06561,Q8XNP3_CLOPE/805-929:0.32966):0.01933,Q8A192_BACTN/1068-1195:1.13334):0.08116,Q9CFI5_LACLA/212-334:0.44412):0.16036):0.26039,((Q9RK44_STRCO/638-748:1.13941,((((Q82M60_STRAW/195-344:0.77249,(Q8A0E7_BACTN/763-877:0.23628,Q8A515_BACTN/721-836:0.53081):0.12166):0.17355,Q82M60_STRAW/58-175:0.56119):0.04956,(Q8A3U9_BACTN/732-846:0.59365,((Q93IE7_9BACL/536-655:0.17254,Q93IE7_9BACL/671-792:0.28235):0.16238,((Q82PL5_STRAW/627-750:0.20602,Q82PL5_STRAW/767-871:0.43233):0.41064,(O87851_STRCO/467-585:0.48414,(Q82NF0_STRAW/70-184:0.27967,(Q8XT36_RALSO/351-470:0.51361,(Q9RK65_STRCO/37-151:0.28888,Q9RK65_STRCO/176-290:0.31407):0.07218):0.06291):0.03590):0.15287):0.07869):0.09617):0.09521):0.22546,(Q9L448_ARTSP/42-172:0.13615,Q9L448_ARTSP/190-323:0.68612):0.74012):0.09972):0.16176,((((P75020_STRLI/512-638:0.29332,Q9FC46_STRCO/200-323:0.29833):0.75419,Q82MD7_STRAW/593-719:0.33232):0.08350,((P75020_STRLI/46-169:0.36431,Q9FC46_STRCO/49-177:0.51587):0.15294,P75020_STRLI/186-309:0.26406):0.11515):0.63481,(Q8XKN0_CLOPE/40-168:0.75000,Q8XKN0_CLOPE/195-319:0.28656):0.31733):0.03290):0.14389):0.12115,((Q8CKA9_YERPE/32-154:1.06422,(Q82N96_STRAW/776-894:0.35252,Q82N96_STRAW/1004-1123:0.24139):0.31706):0.25165,((Q8A1J9_BACTN/343-458:1.12491,(Q8XSJ7_RALSO/1111-1228:0.28045,Q8XSJ7_RALSO/1247-1364:0.10358):0.61011):0.09989,Q82ZM8_ENTFA/46-157:1.22762):0.07125):0.08785):0.10229):0.12171,Q8QKV2_9PHYC/417-531:1.22422):0.05746):0.21307,(O52800_AMYOR/809-933:1.39622,((Q8A0N3_BACTN/318-438:0.91468,(Q89YM0_BACTN/197-314:0.90707,Q8F329_LEPIN/56-173:0.95155):0.29173):0.24079,(((Q8A0R5_BACTN/336-456:1.30325,Q9PH40_XYLFA/342-448:0.60147):0.23449,((Q8A5P6_BACTN/354-473:0.84695,Q89YL8_BACTN/313-434:0.81056):0.18507,Q8XJ85_CLOPE/367-474:0.89401):0.21613):0.51736,Q8XNF8_CLOPE/258-365:1.36518):0.19813):0.14581):0.09864):0.11725,Q8XK80_CLOPE/781-905:1.02976):0.16591,((Q8XKW1_CLOPE/75-206:0.15150,Q8XKW1_CLOPE/300-428:0.48299):0.98874,((Q8IK83_PLAF7/305-420:0.66490,(Q8IKS0_PLAF7/297-426:0.27909,Q8T5Z6_PLABE/298-418:0.30968):0.42962):0.36996,Q8XM24_CLOPE/39-159:0.58497):0.07612):0.07361):0.51322,((Q8CY62_STRR6/617-739:0.46403,Q8CY62_STRR6/906-1032:0.39259):0.15149,Q8CY62_STRR6/765-890:0.46129):0.33701):0.94015,((Q9I925_ANGJA/49-179:0.15712,Q9I927_ANGJA/48-180:0.23084):0.03701,Q9I926_ANGJA/48-177:0.09666):0.27261):0.41176,Q8AVL6_XENLA/176-299:0.13287):0.07239,Q8AVL6_XENLA/33-157:0.38735,Q8AVL6_XENLA/315-439:0.08304);