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Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF00754 - F5_F8_type_C)
F5/8 type C domain
(
Pfam
reference: accession no.
PF00754
)
(
Interpro
reference: accession no.
IPR000421
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
188 sequences @ 220 aa
(ave. pairwise identity: 0.21)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 139.17)
nucleotides
(available for above)
186 sequences @ 660 bp
(ave. pairwise identity: 0.36)
New Hampshire format
(total tree length: 88.04)
amino acids, restricted set
(corresp. to available nt seqs)
186 sequences @ 220 aa
(ave. pairwise identity: 0.21)
New Hampshire format
(total tree length: 136.95)