EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00728 - Glyco_hydro_20)
Glycosyl hydrolase family 20, catalytic domain
(Pfam reference: accession no. PF00728)
(Interpro reference: accession no. IPR001540)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
61 sequences @ 609 aa
(ave. pairwise identity: 0.27)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 43.12)
nucleotides
(available for above)
60 sequences @ 1827 bp
(ave. pairwise identity: 0.40)
New Hampshire format
(total tree length: 29.86)
amino acids, restricted set
(corresp. to available nt seqs)
60 sequences @ 609 aa
(ave. pairwise identity: 0.27)
New Hampshire format
(total tree length: 42.70)