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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00725 phylogeny
for amino acid alignment


 
((((((((((Q9KBD3_BACHD/187-283,((HCDH_HUMAN/216-313,(HCD2_CAEEL/211-308,HCD1_CAEEL/199-296)),O44608_CAEEL/202-299)),(((Q9ZBJ9_STRCO/196-292,Q9ZBJ9_STRCO/502-598),(O88051_STRCO/206-302,O53753_MYCTU/190-286)),(((Q97AH0_THEVO/189-285,O29077_ARCFU/192-288),O29815_ARCFU/186-282),Q9K4C6_STRCO/186-282))),(((((Q9RZ10_DEIRA/239-335,O29090_ARCFU/181-277),(((((Q978T2_THEVO/186-280,(O28011_ARCFU/200-294,O29237_ARCFU/186-280)),O29956_ARCFU/188-278),O29143_ARCFU/183-276),(O30218_ARCFU/190-288,((Q97UK9_SULSO/186-281,((Q97VU5_SULSO/190-286,Q97UX0_SULSO/186-280),Q9YBW6_AERPE/188-282)),Q9HQ61_HALN1/191-286))),(((MFPA_CUCSA/495-588,Q9ZPI6_ARATH/492-585),((FADB_ECOLI/496-592,FAOB_PSEFR/497-592),((Q9V397_DROME/556-651,((ECHA_HUMAN/544-639,O57660_CHICK/551-646),O17612_CAEEL/535-630)),((YFCX_ECOLI/492-586,Q9KT58_VIBCH/513-606),(Q98BD2_RHILO/509-606,(Q9ABZ4_CAUCR/482-579,(Q9I300_PSEAE/499-599,(O53872_MYCTU/508-607,Q9X7N8_STRCO/504-604)))))))),(((ECHP_CAVPO/480-584,ECHP_HUMAN/477-581),((Q9A3L4_CAUCR/483-581,Q98EK7_RHILO/475-561),Q9HU01_PSEAE/190-281)),Q9RUA4_DEIRA/490-582)))),((Q9HY36_PSEAE/189-286,(Q9F9V1_9RHOO/190-287,((O84980_PSEPU/190-287,Q9XA30_STRCO/190-287),PAAH_ECOLI/188-285))),(Q9ZCZ1_RICPR/193-295,Q99WZ1_STAAM/189-287))),(Q979P5_THEVO/219-314,Q9HJM0_THEAC/219-314)),(((Q9KGA8_BACHD/186-281,((Q9KIE3_STRHY/181-277,Q9ADL9_POLCB/196-292),(Q9LDF5_ARATH/187-283,(HBD_BACSU/186-282,(HBD_CLOAB/184-280,(HBD_CLODI/183-279,HBD_CLOTS/183-279)))))),Q9HRI4_HALN1/190-285),((Q9HY36_PSEAE/415-510,Q9I394_PSEAE/414-509),Q9XA30_STRCO/413-504)))),Q988C8_RHILO/184-282),(Q53926_STRCO/176-278,(Q9UX37_SULSO/193-287,(O29062_ARCFU/188-281,Q9HTH8_PSEAE/188-280)))),Q98LG2_RHILO/186-278),CRYL_RABIT/191-282),Q9N4G5_CAEEL/190-281),Q9Y1C5_APIME/7-98),Q9VXI1_DROME/191-282,Q9V738_DROME/189-281);
((((((((((Q9KBD3_BACHD/187-283:0.40520,((HCDH_HUMAN/216-313:0.16555,(HCD2_CAEEL/211-308:0.16780,HCD1_CAEEL/199-296:0.20746):0.05202):0.13268,O44608_CAEEL/202-299:0.33651):0.22461):0.02998,(((Q9ZBJ9_STRCO/196-292:0.42969,Q9ZBJ9_STRCO/502-598:0.39901):0.17259,(O88051_STRCO/206-302:0.11555,O53753_MYCTU/190-286:0.33637):0.18953):0.09418,(((Q97AH0_THEVO/189-285:0.37543,O29077_ARCFU/192-288:0.28081):0.29129,O29815_ARCFU/186-282:0.62097):0.06977,Q9K4C6_STRCO/186-282:0.46156):0.19600):0.10279):0.04696,(((((Q9RZ10_DEIRA/239-335:0.99648,O29090_ARCFU/181-277:0.76409):0.24951,(((((Q978T2_THEVO/186-280:0.74208,(O28011_ARCFU/200-294:0.04863,O29237_ARCFU/186-280:0.53329):0.11474):0.22627,O29956_ARCFU/188-278:0.31930):0.24073,O29143_ARCFU/183-276:0.50251):0.04474,(O30218_ARCFU/190-288:0.50061,((Q97UK9_SULSO/186-281:0.41025,((Q97VU5_SULSO/190-286:0.28135,Q97UX0_SULSO/186-280:0.24729):0.26305,Q9YBW6_AERPE/188-282:0.27689):0.21753):0.16625,Q9HQ61_HALN1/191-286:0.41077):0.10655):0.16019):0.19414,(((MFPA_CUCSA/495-588:0.38742,Q9ZPI6_ARATH/492-585:0.49136):0.44199,((FADB_ECOLI/496-592:0.20514,FAOB_PSEFR/497-592:0.16555):0.61586,((Q9V397_DROME/556-651:0.15000,((ECHA_HUMAN/544-639:0.05375,O57660_CHICK/551-646:0.23621):0.11478,O17612_CAEEL/535-630:0.37974):0.11573):0.42038,((YFCX_ECOLI/492-586:0.24737,Q9KT58_VIBCH/513-606:0.34491):0.22897,(Q98BD2_RHILO/509-606:0.43604,(Q9ABZ4_CAUCR/482-579:0.37141,(Q9I300_PSEAE/499-599:0.27464,(O53872_MYCTU/508-607:0.33619,Q9X7N8_STRCO/504-604:0.40086):0.28082):0.25060):0.26303):0.49252):0.08739):0.08680):0.12808):0.06988,(((ECHP_CAVPO/480-584:0.10924,ECHP_HUMAN/477-581:0.15637):0.29767,((Q9A3L4_CAUCR/483-581:0.98485,Q98EK7_RHILO/475-561:0.31233):0.08284,Q9HU01_PSEAE/190-281:0.51350):0.09123):0.14292,Q9RUA4_DEIRA/490-582:0.56395):0.28580):0.15911):0.00750):0.09080,((Q9HY36_PSEAE/189-286:0.30554,(Q9F9V1_9RHOO/190-287:0.18407,((O84980_PSEPU/190-287:0.20209,Q9XA30_STRCO/190-287:0.24798):0.09422,PAAH_ECOLI/188-285:0.25141):0.06794):0.27870):0.19738,(Q9ZCZ1_RICPR/193-295:1.08760,Q99WZ1_STAAM/189-287:0.40494):0.70847):0.09011):0.04366,(Q979P5_THEVO/219-314:0.16164,Q9HJM0_THEAC/219-314:0.16317):0.26930):0.05235,(((Q9KGA8_BACHD/186-281:0.33402,((Q9KIE3_STRHY/181-277:0.49836,Q9ADL9_POLCB/196-292:0.31472):0.17276,(Q9LDF5_ARATH/187-283:0.21062,(HBD_BACSU/186-282:0.18574,(HBD_CLOAB/184-280:0.06905,(HBD_CLODI/183-279:0.14760,HBD_CLOTS/183-279:0.21093):0.08653):0.16873):0.06053):0.08767):0.07077):0.03283,Q9HRI4_HALN1/190-285:0.34731):0.10200,((Q9HY36_PSEAE/415-510:0.08755,Q9I394_PSEAE/414-509:0.20226):0.20772,Q9XA30_STRCO/413-504:1.04538):0.70077):0.03598):0.07885):0.66006,Q988C8_RHILO/184-282:0.76527):0.59306,(Q53926_STRCO/176-278:0.85469,(Q9UX37_SULSO/193-287:0.27369,(O29062_ARCFU/188-281:0.48826,Q9HTH8_PSEAE/188-280:0.60804):0.33612):0.15415):0.30200):0.24696,Q98LG2_RHILO/186-278:0.66455):0.21206,CRYL_RABIT/191-282:0.24683):0.07812,Q9N4G5_CAEEL/190-281:0.47962):0.19357,Q9Y1C5_APIME/7-98:0.19213):0.13245,Q9VXI1_DROME/191-282:0.09550,Q9V738_DROME/189-281:0.53649);