EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00687 - Ribosomal_L1)
Ribosomal protein L1p/L10e family
(Pfam reference: accession no. PF00687)
(Interpro reference: accession no. IPR002143)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
16 sequences @ 220 aa
(ave. pairwise identity: 0.40)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 7.81)
nucleotides
(available for above)
14 sequences @ 660 bp
(ave. pairwise identity: 0.47)
New Hampshire format
(total tree length: 5.72)
amino acids, restricted set
(corresp. to available nt seqs)
14 sequences @ 220 aa
(ave. pairwise identity: 0.40)
New Hampshire format
(total tree length: 7.32)