EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00680 - RdRP_1)
RNA dependent RNA polymerase
(Pfam reference: accession no. PF00680)
(Interpro reference: accession no. IPR001205)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
39 sequences @ 702 aa
(ave. pairwise identity: 0.24)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 24.86)
nucleotides
(available for above)
35 sequences @ 2106 bp
(ave. pairwise identity: 0.37)
New Hampshire format
(total tree length: 16.96)
amino acids, restricted set
(corresp. to available nt seqs)
35 sequences @ 702 aa
(ave. pairwise identity: 0.24)
New Hampshire format
(total tree length: 23.39)