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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00656 phylogeny
for nucleotide alignment


 
((((O64519_ARATH/3-366,O64518_ARATH/3-408),(O64520_ARATH/3-386,Q9SA41_ARATH/3-378)),O64517_ARATH/3-416),((((((((((((Q89MV1_BRAJA/176-400,(Q985X8_RHILO/35-256,(Q89KP2_BRAJA/86-307,Q6N5Q1_RHOPA/33-253))),(Q89HT8_BRAJA/51-272,(Q89FZ4_BRAJA/32-256,Q6N329_RHOPA/73-298))),(((Q98JS7_RHILO/35-253,Q98IJ6_RHILO/11-238),(Q98IJ9_RHILO/30-261,Q89HP3_BRAJA/336-569)),(Q89IK1_BRAJA/30-253,Q98G71_RHILO/26-252))),Q98CE0_RHILO/5-238),((Q89XG2_BRAJA/27-248,Q6N0T4_RHOPA/30-251),(Q89XE4_BRAJA/58-278,Q6NBN5_RHOPA/57-277))),((Q7WDK3_BORBR/552-800,Q82I86_STRAW/5-276),(Q74F93_GEOSL/6-270,Q53839_STRCO/9-268))),Q7NPG1_GLOVI/7-278),P74453_SYNY3/40-299),(Q87Z21_PSESM/2-225,(Q7RFI8_PLAYO/964-1364,((Q8YS65_ANASP/4-245,((Q8I749_SUBDO/254-491,((((((Q8ITP3_BRAFL/87-323,((Q6DCI2_XENLA/78-314,O88550_RAT/68-301),(((Q98UI8_BRARE/48-280,Q8JG42_FUGRU/51-279),((O93417_CHICK/53-281,Q9GV88_HYDAT/84-316),CASP3_XENLA/56-280)),Q8JIS8_ORYLA/58-285))),(((CASP6_MOUSE/28-270,(O93415_CHICK/57-299,Q9IB66_XENLA/58-298)),Q9I8S9_ONCMY/57-297),Q8ITP2_BRAFL/151-396)),((Q9NHF9_DROME/56-302,(((Q86FL0_ANOST/52-286,Q7PV92_ANOGA/18-255),Q7Q803_ANOGA/54-306),(Q7QKT2_ANOGA/35-260,Q7PZJ9_ANOGA/20-250))),((Q7Q1E0_ANOGA/53-282,(Q7Q4X6_ANOGA/73-309,(ICE_DROME/94-328,CASP1_DROME/79-313))),CASP1_SPOFR/61-293))),(((Q9IB63_XENLA/144-396,(Q90WU0_CHICK/148-400,CASP9_HUMAN/161-413)),(((CASPE_HUMAN/18-241,CASPE_MOUSE/22-256),((((((CASP1_PIG/163-400,CASP1_HUMAN/163-400),CASP1_MOUSE/162-398),(((((CASP1_CANFA/163-400,CASP1_FELCA/161-406),CASPD_BOVIN/136-373),CASP5_HUMAN/177-414),CASP4_MOUSE/132-369),CASPC_MOUSE/176-415)),O42284_CHICK/42-279),CAS1A_XENLA/144-382),(Q9I9L7_BRARE/145-379,Q9DDJ2_BRARE/174-400))),O55194_RAT/200-445)),Q8I6Y2_GEOCY/158-414)),(((((Q6QN97_PIG/259-484,CFLAR_HUMAN/252-477),CFLAR_MOUSE/257-481),Q6NTR7_XENLA/280-494),Q6E5N8_ICTPU/119-362),(Q9IB64_XENLA/261-494,((Q9I8J3_BRARE/238-473,Q6PAD9_XENLA/268-495),(Q90WU1_CHICK/237-479,(CASP8_HUMAN/234-476,CASP8_MOUSE/236-478)))))),(Q9GV89_HYDAT/93-318,(Q9Y1U6_PRIPA/173-413,(((Q9TZP5_CAEEL/26-261,ICENC_DROME/196-443),O18203_CAEEL/293-532),CED3_CAEEL/243-494))))),((Q9V9J6_DROME/313-523,Q9NBW3_DROME/38-248),Q7QGM9_ANOGA/4-212))),((Q9GPM2_DICDI/188-405,Q86JK1_DICDI/22-316),(Q6AKF4_DESPS/28-248,((Q9DDL2_BRARE/323-560,Q8BFT0_MOUSE/340-577),Q19719_CAEEL/252-476))))))),(((Q8T8E8_9TRYP/84-341,Q8T8E6_9TRYP/84-343),Q8IEW1_9TRYP/63-322),((Q7XJE5_ARATH/116-414,(Q7XC24_ORYSA/76-374,O81911_ARATH/80-386)),((((Q75B43_ASHGO/154-449,((Q6FPX9_CANGA/98-389,Q08601_YEAST/157-450),Q6CLS0_KLULA/161-453)),Q6BH13_DEBHA/146-437),O74477_SCHPO/130-422),Q6C2Y6_YARLI/168-458)))),Q8LCR8_ARATH/5-316),Q70VV0_PICAB/3-415),Q9ZSP8_HEVBR/3-415);
((((O64519_ARATH/3-366:0.12351,O64518_ARATH/3-408:0.08421):0.06938,(O64520_ARATH/3-386:0.14739,Q9SA41_ARATH/3-378:0.26355):0.07433):0.04458,O64517_ARATH/3-416:0.14995):0.09338,((((((((((((Q89MV1_BRAJA/176-400:0.30053,(Q985X8_RHILO/35-256:0.17976,(Q89KP2_BRAJA/86-307:0.07300,Q6N5Q1_RHOPA/33-253:0.18896):0.09631):0.19635):0.07878,(Q89HT8_BRAJA/51-272:0.23019,(Q89FZ4_BRAJA/32-256:0.15235,Q6N329_RHOPA/73-298:0.19711):0.11232):0.11729):0.03293,(((Q98JS7_RHILO/35-253:0.40864,Q98IJ6_RHILO/11-238:0.33614):0.10112,(Q98IJ9_RHILO/30-261:0.28012,Q89HP3_BRAJA/336-569:0.34639):0.05492):0.06331,(Q89IK1_BRAJA/30-253:0.33455,Q98G71_RHILO/26-252:0.28589):0.05929):0.07034):0.05271,Q98CE0_RHILO/5-238:0.45809):0.04326,((Q89XG2_BRAJA/27-248:0.16569,Q6N0T4_RHOPA/30-251:0.15911):0.10659,(Q89XE4_BRAJA/58-278:0.16009,Q6NBN5_RHOPA/57-277:0.26131):0.11949):0.19889):0.27381,((Q7WDK3_BORBR/552-800:0.62435,Q82I86_STRAW/5-276:0.49081):0.09765,(Q74F93_GEOSL/6-270:0.46497,Q53839_STRCO/9-268:0.73405):0.09502):0.04157):0.19006,Q7NPG1_GLOVI/7-278:0.60670):0.18280,P74453_SYNY3/40-299:0.87848):0.19576,(Q87Z21_PSESM/2-225:0.64795,(Q7RFI8_PLAYO/964-1364:0.73388,((Q8YS65_ANASP/4-245:0.70133,((Q8I749_SUBDO/254-491:0.53069,((((((Q8ITP3_BRAFL/87-323:0.24453,((Q6DCI2_XENLA/78-314:0.22129,O88550_RAT/68-301:0.18834):0.08545,(((Q98UI8_BRARE/48-280:0.18897,Q8JG42_FUGRU/51-279:0.15758):0.08987,((O93417_CHICK/53-281:0.15169,Q9GV88_HYDAT/84-316:0.62322):0.07265,CASP3_XENLA/56-280:0.25176):0.10526):0.06683,Q8JIS8_ORYLA/58-285:0.26484):0.05659):0.08997):0.04596,(((CASP6_MOUSE/28-270:0.16441,(O93415_CHICK/57-299:0.14451,Q9IB66_XENLA/58-298:0.25138):0.08359):0.08707,Q9I8S9_ONCMY/57-297:0.16529):0.15426,Q8ITP2_BRAFL/151-396:0.27473):0.14483):0.06508,((Q9NHF9_DROME/56-302:0.34565,(((Q86FL0_ANOST/52-286:0.23858,Q7PV92_ANOGA/18-255:0.17069):0.09101,Q7Q803_ANOGA/54-306:0.31233):0.08007,(Q7QKT2_ANOGA/35-260:0.20080,Q7PZJ9_ANOGA/20-250:0.14490):0.36411):0.08519):0.12422,((Q7Q1E0_ANOGA/53-282:0.33726,(Q7Q4X6_ANOGA/73-309:0.17937,(ICE_DROME/94-328:0.18355,CASP1_DROME/79-313:0.17968):0.05608):0.07488):0.03782,CASP1_SPOFR/61-293:0.33515):0.13216):0.11733):0.08220,(((Q9IB63_XENLA/144-396:0.24261,(Q90WU0_CHICK/148-400:0.18378,CASP9_HUMAN/161-413:0.19844):0.05467):0.26932,(((CASPE_HUMAN/18-241:0.12440,CASPE_MOUSE/22-256:0.11947):0.39241,((((((CASP1_PIG/163-400:0.09104,CASP1_HUMAN/163-400:0.11277):0.03793,CASP1_MOUSE/162-398:0.13212):0.08102,(((((CASP1_CANFA/163-400:0.08008,CASP1_FELCA/161-406:0.08859):0.02672,CASPD_BOVIN/136-373:0.09129):0.02113,CASP5_HUMAN/177-414:0.11260):0.03378,CASP4_MOUSE/132-369:0.22177):0.07047,CASPC_MOUSE/176-415:0.24057):0.07169):0.14304,O42284_CHICK/42-279:0.28816):0.08864,CAS1A_XENLA/144-382:0.33226):0.14212,(Q9I9L7_BRARE/145-379:0.31668,Q9DDJ2_BRARE/174-400:0.36810):0.14699):0.17843):0.06504,O55194_RAT/200-445:0.46069):0.10979):0.06911,Q8I6Y2_GEOCY/158-414:0.40823):0.05690):0.08841,(((((Q6QN97_PIG/259-484:0.09411,CFLAR_HUMAN/252-477:0.09993):0.06225,CFLAR_MOUSE/257-481:0.15594):0.30875,Q6NTR7_XENLA/280-494:0.38544):0.46934,Q6E5N8_ICTPU/119-362:0.28667):0.13800,(Q9IB64_XENLA/261-494:0.51042,((Q9I8J3_BRARE/238-473:0.37409,Q6PAD9_XENLA/268-495:0.30945):0.09111,(Q90WU1_CHICK/237-479:0.19127,(CASP8_HUMAN/234-476:0.09417,CASP8_MOUSE/236-478:0.14578):0.11577):0.14311):0.06383):0.06811):0.13136):0.13140,(Q9GV89_HYDAT/93-318:0.64762,(Q9Y1U6_PRIPA/173-413:0.42538,(((Q9TZP5_CAEEL/26-261:0.40292,ICENC_DROME/196-443:0.55442):0.10149,O18203_CAEEL/293-532:0.43130):0.11052,CED3_CAEEL/243-494:0.36396):0.11406):0.04201):0.03512):0.12214):0.09259,((Q9V9J6_DROME/313-523:0.41742,Q9NBW3_DROME/38-248:0.42134):0.11574,Q7QGM9_ANOGA/4-212:0.52512):0.16706):0.27776):0.04101,((Q9GPM2_DICDI/188-405:0.53672,Q86JK1_DICDI/22-316:0.43455):0.25782,(Q6AKF4_DESPS/28-248:0.54194,((Q9DDL2_BRARE/323-560:0.25609,Q8BFT0_MOUSE/340-577:0.20090):0.32483,Q19719_CAEEL/252-476:0.46224):0.26027):0.05784):0.12067):0.12792):0.15805):0.12342):0.15509,(((Q8T8E8_9TRYP/84-341:0.34668,Q8T8E6_9TRYP/84-343:0.26097):0.09658,Q8IEW1_9TRYP/63-322:0.33464):0.19883,((Q7XJE5_ARATH/116-414:0.23162,(Q7XC24_ORYSA/76-374:0.15614,O81911_ARATH/80-386:0.17036):0.12171):0.27035,((((Q75B43_ASHGO/154-449:0.26366,((Q6FPX9_CANGA/98-389:0.18291,Q08601_YEAST/157-450:0.15033):0.06930,Q6CLS0_KLULA/161-453:0.20661):0.04550):0.08091,Q6BH13_DEBHA/146-437:0.21933):0.06931,O74477_SCHPO/130-422:0.31561):0.09567,Q6C2Y6_YARLI/168-458:0.21740):0.13236):0.09719):0.14138):0.28571,Q8LCR8_ARATH/5-316:0.37093):0.09722,Q70VV0_PICAB/3-415:0.20232):0.09453,Q9ZSP8_HEVBR/3-415:0.16753);