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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00641 alignment
(22 sequences with 99 bp)


SOL_DROME/643-673 CGCAGTAAG---ATGTGGATATGC...ATCAAATGTTCCTATGCCTACAACCGACTCTGGCTCCAGACTTGCGAGATGTGCGAGGCCAAAGCCGAACAG
SOL_DROME/135-164 CTGAATCGG---CGGTGGGTGTGC...---CACGCCTGCGGCACGGACAACAGCTCGGTCACCTGGCACTGCCTCATCTGTGACACGGTCAGCTATCTG
SOL_DROME/6-35 TCCGTGCTG---CAGTGGTCGTGC...---ACCAAATGTAACACTATCAATCCCACGGAGTCGCTCAAGTGCTTCAATTGCGGCACCGTCCGCAAGGTG
MDM2_HUMAN/299-328 TTAGCTGAC---TATTGGAAATGC...---ACTTCATGCAATGAAATGAATCCCCCCCTTCCATCACATTGCAACAGATGTTGGGCCCTTCGTGAGAAT
RBP2_HUMAN/1781-1810 AGGAAAGGA---CAGTGGGATTGT...---AGTGTTTGCTGTGTACAAAATGAGAGTTCTTCCTTAAAATGTGTGGCTTGTGATGCCTCTAAACCAACT
RBP2_HUMAN/1606-1635 AAGGAGGGA---CAGTGGGATTGC...---AGTGTGTGCTTAGTAAGAAATGAAGCCAGTGCTACCAAATGTATTGCTTGTCAGAATCCAGGTAAACAA
RBP2_HUMAN/1479-1508 AAGGAAGGA---CAGTGGGATTGC...---AGTGCATGTTTGGTACAAAATGAGGGGAGCTCTACAAAATGTGCTGCTTGTCAGAATCCGAGAAAACAG
RBP2_HUMAN/1543-1572 AAGGAAGGA---CAGTGGGATTGC...---AGTTCATGCTTAGTGCGAAATGAAGCAAATGCTACAAGATGTGTTGCTTGTCAGAATCCGGATAAACCA
RBP2_HUMAN/1415-1444 AAAGAAGGT---CACTGGGATTGT...---AGTATTTGTTTAGTAAGAAATGAACCTACTGTATCTAGGTGCATTGCGTGTCAGAATACAAAATCTGCT
RBP2_HUMAN/1351-1381 AAAGAAGGGTCTTGGTGGCATTGT...---AACAGCTGCTCATTAAAGAATGCTTCAACTGCTAAGAAATGTGTATCATGCCAAAATCTAAACCCAAGC
NU153_HUMAN/657-687 AAAGCTGGGTCATCATGGCAGTGT...---GATACATGTCTACTCCAGAACAAAGTTACAGACAACAAATGCATAGCCTGTCAAGCAGCAAAATTGTCA
NU153_HUMAN/793-822 CCCATTGGA---TCTTGGGAGTGT...---TCAGTATGCTGTGTTTCTAATAATGCAGAAGACAATAAGTGTGTGTCCTGTATGTCTGAGAAACCAGGA
NU153_HUMAN/851-880 CCCGAGGGA---AGCTGGGACTGT...---GAATTGTGCCTAGTGCAGAATAAGGCAGACTCTACCAAATGTTTGGCATGTGAAAGTGCAAAGCCAGGC
NU153_HUMAN/722-751 GTGATAGGC---ACTTGGGATTGT...---GATACCTGTTTAGTGCAAAATAAACCTGAAGCAATAAAATGTGTAGCCTGTGAAACACCGAAACCTGGA
RBM5_HUMAN/181-210 AAGTTTGAA---GATTGGCTTTGT...---AACAAGTGCTGCCTTAACAATTTCAGGAAAAGACTAAAATGCTTCCGATGTGGAGCAGACAAGTTTGAC
FUS_HUMAN/422-453 CGAGCTGGT---GACTGGAAGTGTcctAATCCCACCTGTGAGAATATGAACTTCTCTTGGAGGAATGAATGCAACCAGTGTAAGGCCCCTAAACCAGAT
EWS_HUMAN/518-549 CGAGCTGGA---GACTGGCAGTGTcccAATCCGGGTTGTGGAAACCAGAACTTCGCCTGGAGAACAGAGTGCAACCAGTGTAAGGCCCCAAAGCCTGAA
NRP1_YEAST/355-384 AGACCAGGT---GACTGGAATTGC...---CCATCTTGTGGTTTTTCAAACTTTCAAAGACGTACTGCATGTTTTAGATGTTCTTTTCCGGCACCATCA
NRP1_YEAST/581-610 AGAGCAGGA---GATTGGAAGTGT...---TCCACGTGCACGTATCATAACTTTGCTAAAAACGTAGTGTGCTTACGCTGTGGTGGTCCAAAATCAATA
SOL_DROME/927-956 AGCACAAAG---AAGTGGCAGTGT...---CCCGCGTGCACGTACGATAACTGTGCCGCTTCCGTCGTTTGTGACATCTGCTCGAGTCCGCGCGGCCTG
SOL_DROME/744-774 CGAAAGGGCGAGTTCTGGACCTGC...---AGCCACTGTACGCTCAAGAACTCGCTGCACTCGCCGGTCTGCAGTGCCTGCAAGTCCCACCGCCAGCCG
SOL_DROME/704-733 CGCGACGAG---CCATGGACCTGC...---AAGAAGTGCACCCTGGTTAACTACTCGACAGCAATGGCCTGCGTGGTGTGCGGCGGCTCCAAGCTGAAA