EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00632 - HECT)
HECT-domain (ubiquitin-transferase)
(Pfam reference: accession no. PF00632)
(Interpro reference: accession no. IPR000569)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
75 sequences @ 576 aa
(ave. pairwise identity: 0.32)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 41.69)
nucleotides
(available for above)
72 sequences @ 1728 bp
(ave. pairwise identity: 0.43)
New Hampshire format
(total tree length: 32.82)
amino acids, restricted set
(corresp. to available nt seqs)
72 sequences @ 576 aa
(ave. pairwise identity: 0.32)
New Hampshire format
(total tree length: 40.62)