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Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF00632 - HECT)
HECT-domain (ubiquitin-transferase)
(
Pfam
reference: accession no.
PF00632
)
(
Interpro
reference: accession no.
IPR000569
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
75 sequences @ 576 aa
(ave. pairwise identity: 0.32)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 41.69)
nucleotides
(available for above)
72 sequences @ 1728 bp
(ave. pairwise identity: 0.43)
New Hampshire format
(total tree length: 32.82)
amino acids, restricted set
(corresp. to available nt seqs)
72 sequences @ 576 aa
(ave. pairwise identity: 0.32)
New Hampshire format
(total tree length: 40.62)