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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00628 phylogeny
for restricted amino acid alignment


 
((((((((YANC_SCHPO/261-311,O17006_CAEEL/149-202),((((O64516_ARATH/703-751,O80659_ARATH/970-1018),YGN1_YEAST/319-369),((FALZ_HUMAN/253-298,(((((YMW5_YEAST/262-309,YA27_SCHPO/265-312),YAC5_SCHPO/119-166),(Q9UKX0_HUMAN/271-320,((HAT31_ARATH/205-260,O24569_MAIZE/211-266),PRH_ARATH/192-247))),(((O80922_ARATH/466-509,((Q19511_CAEEL/29-75,Q18605_CAEEL/61-106),(O88491_MOUSE/1607-1649,O96028_HUMAN/833-875))),(O96028_HUMAN/669-713,O88491_MOUSE/1443-1487)),Q9ZQA2_ARATH/579-622)),((((((CHD3_DROME/37-82,O48579_ARATH/63-108),CHDM_DROME/439-484),(AIRE_HUMAN/298-343,Q9ZW00_ARATH/627-670)),CHD4_HUMAN/451-496),(Q19815_CAEEL/319-365,CHD3_CAEEL/330-375)),((CHD3_CAEEL/267-312,Q19815_CAEEL/258-303),CHD3_HUMAN/381-426)))),(((BAZ2A_HUMAN/1651-1699,(O94400_SCHPO/124-170,(Q23541_CAEEL/321-371,(JD1C_HUMAN/326-374,RBBP2_HUMAN/295-343)))),YJ89_YEAST/237-285),(Q9Z1H6_MOUSE/322-371,BAZ1B_HUMAN/1186-1234)))),TF1B_MOUSE/627-672)),((O94800_HUMAN/98-144,(RBBP2_HUMAN/1163-1218,JD1C_HUMAN/1187-1250)),(Q17909_CAEEL/309-357,((((((O45410_CAEEL/172-221,((O81488_ARATH/197-247,O49216_ORYSA/217-267),(O45407_CAEEL/217-266,(Q43479_HORVU/147-196,O65462_ARATH/115-164)))),(PHF3_HUMAN/719-772,DATF1_HUMAN/270-322)),((O93321_FUGRU/815-868,((MLL4_HUMAN/1337-1396,HRX_HUMAN/1568-1627),TRX_DROME/1423-1482)),((LIN59_CAEEL/969-1027,(YKA5_YEAST/74-134,(O44498_CAEEL/820-866,(((Q02316_LENED/129-178,((Q9ZUA9_ARATH/637-685,SET4_YEAST/162-210),SET3_YEAST/119-166)),(Q08923_YEAST/74-123,YDBB_SCHPO/5-51)),O95038_HUMAN/120-166)))),RBBP2_HUMAN/1647-1693))),(Q03012_YEAST/24-72,O74508_SCHPO/120-168)),YM42_YEAST/1240-1290),((ING1_HUMAN/355-402,Q9HC99_HUMAN/362-409),(YHP0_YEAST/224-271,(O42871_SCHPO/230-277,(O74736_SCHPO/250-297,YNJ7_YEAST/282-329)))))))),((PHF1_MOUSE/89-142,((YAJ8_SCHPO/234-288,P87233_SCHPO/192-246),MTF2_MOUSE/2-55)),(PHF16_HUMAN/202-250,((Q12311_YEAST/265-313,O74759_SCHPO/196-244),((Q10652_CAEEL/7-57,AF17_HUMAN/7-57),YGN1_YEAST/1040-1097))))),(MLL2_HUMAN/1104-1155,O93321_FUGRU/688-739)),((O93321_FUGRU/214-262,MLL2_HUMAN/228-276),((MYST3_HUMAN/208-265,DPF1_HUMAN/229-284),YP99_CAEEL/256-314))),(HRX_HUMAN/1433-1482,MLL4_HUMAN/1203-1252)),TRX_DROME/1268-1347,TRX_DROVI/1253-1334);
((((((((YANC_SCHPO/261-311:0.80757,O17006_CAEEL/149-202:0.78328):0.25473,((((O64516_ARATH/703-751:0.55360,O80659_ARATH/970-1018:0.97699):0.03334,YGN1_YEAST/319-369:0.95199):0.40626,((FALZ_HUMAN/253-298:0.52803,(((((YMW5_YEAST/262-309:0.21545,YA27_SCHPO/265-312:0.26600):0.13613,YAC5_SCHPO/119-166:0.53839):0.25642,(Q9UKX0_HUMAN/271-320:0.78053,((HAT31_ARATH/205-260:0.18357,O24569_MAIZE/211-266:0.13757):0.31904,PRH_ARATH/192-247:0.07134):0.70344):0.08448):0.05859,(((O80922_ARATH/466-509:0.43708,((Q19511_CAEEL/29-75:0.62210,Q18605_CAEEL/61-106:0.22997):0.33565,(O88491_MOUSE/1607-1649:0.00000,O96028_HUMAN/833-875:0.26289):0.41225):0.07158):0.01737,(O96028_HUMAN/669-713:0.28065,O88491_MOUSE/1443-1487:0.22698):0.62650):0.08491,Q9ZQA2_ARATH/579-622:0.33699):0.32481):0.26744,((((((CHD3_DROME/37-82:0.22205,O48579_ARATH/63-108:0.38243):0.24628,CHDM_DROME/439-484:0.09223):0.09296,(AIRE_HUMAN/298-343:0.39094,Q9ZW00_ARATH/627-670:0.51701):0.27198):0.05765,CHD4_HUMAN/451-496:0.08561):0.23408,(Q19815_CAEEL/319-365:0.44062,CHD3_CAEEL/330-375:0.04135):0.28960):0.19092,((CHD3_CAEEL/267-312:0.12868,Q19815_CAEEL/258-303:0.11156):0.24218,CHD3_HUMAN/381-426:0.21045):0.27697):0.08663):0.13605):0.17073,(((BAZ2A_HUMAN/1651-1699:0.48107,(O94400_SCHPO/124-170:0.67558,(Q23541_CAEEL/321-371:0.54368,(JD1C_HUMAN/326-374:0.30553,RBBP2_HUMAN/295-343:0.08878):0.20289):0.07305):0.21801):0.04417,YJ89_YEAST/237-285:0.55604):0.17789,(Q9Z1H6_MOUSE/322-371:0.51806,BAZ1B_HUMAN/1186-1234:0.41364):0.00000):0.15563):0.09050):0.12451,TF1B_MOUSE/627-672:0.66477):0.40155):0.16012,((O94800_HUMAN/98-144:0.53687,(RBBP2_HUMAN/1163-1218:0.33806,JD1C_HUMAN/1187-1250:0.43090):0.11936):0.47282,(Q17909_CAEEL/309-357:0.60529,((((((O45410_CAEEL/172-221:0.33856,((O81488_ARATH/197-247:0.15118,O49216_ORYSA/217-267:0.12037):0.60905,(O45407_CAEEL/217-266:0.57792,(Q43479_HORVU/147-196:0.23386,O65462_ARATH/115-164:0.15761):0.56133):0.23312):0.09772):0.23949,(PHF3_HUMAN/719-772:0.49449,DATF1_HUMAN/270-322:0.30418):0.01729):0.07195,((O93321_FUGRU/815-868:0.97882,((MLL4_HUMAN/1337-1396:0.28355,HRX_HUMAN/1568-1627:0.17557):0.07771,TRX_DROME/1423-1482:0.23285):0.25940):0.31482,((LIN59_CAEEL/969-1027:0.79130,(YKA5_YEAST/74-134:0.38015,(O44498_CAEEL/820-866:0.49080,(((Q02316_LENED/129-178:0.70718,((Q9ZUA9_ARATH/637-685:0.74142,SET4_YEAST/162-210:0.50990):0.44806,SET3_YEAST/119-166:0.32859):0.16242):0.11932,(Q08923_YEAST/74-123:0.56689,YDBB_SCHPO/5-51:0.19433):0.07018):0.22683,O95038_HUMAN/120-166:0.22292):0.37894):0.09067):0.14595):0.52332,RBBP2_HUMAN/1647-1693:0.52738):0.00000):0.49208):0.18774,(Q03012_YEAST/24-72:0.76711,O74508_SCHPO/120-168:0.07428):0.28695):0.24056,YM42_YEAST/1240-1290:0.87101):0.11819,((ING1_HUMAN/355-402:0.31047,Q9HC99_HUMAN/362-409:0.02440):0.09759,(YHP0_YEAST/224-271:0.13212,(O42871_SCHPO/230-277:0.23882,(O74736_SCHPO/250-297:0.16514,YNJ7_YEAST/282-329:0.35718):0.08550):0.10314):0.22025):0.28622):0.13130):0.10921):0.38079):0.06235,((PHF1_MOUSE/89-142:0.64924,((YAJ8_SCHPO/234-288:0.41230,P87233_SCHPO/192-246:0.17921):0.41134,MTF2_MOUSE/2-55:0.35368):0.10533):0.04920,(PHF16_HUMAN/202-250:0.31471,((Q12311_YEAST/265-313:0.39793,O74759_SCHPO/196-244:0.32663):0.07831,((Q10652_CAEEL/7-57:0.14156,AF17_HUMAN/7-57:0.31155):0.36945,YGN1_YEAST/1040-1097:1.14623):0.09900):0.15106):0.35870):0.29616):0.92641,(MLL2_HUMAN/1104-1155:0.20861,O93321_FUGRU/688-739:0.00000):0.46755):0.20086,((O93321_FUGRU/214-262:0.11137,MLL2_HUMAN/228-276:0.31482):0.20866,((MYST3_HUMAN/208-265:0.34639,DPF1_HUMAN/229-284:0.16188):0.18736,YP99_CAEEL/256-314:0.23034):0.74452):0.28959):0.45396,(HRX_HUMAN/1433-1482:0.25168,MLL4_HUMAN/1203-1252:0.18413):0.64321):0.25629,TRX_DROME/1268-1347:0.00000,TRX_DROVI/1253-1334:0.02257);