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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00628 phylogeny
for nucleotide alignment


 
((((((((((((BAZ2A_HUMAN/1651-1699,((CHD3_CAEEL/267-312,Q19815_CAEEL/258-303),CHD3_HUMAN/381-426)),((CHDM_DROME/439-484,CHD3_DROME/37-82),(CHD4_HUMAN/451-496,(Q19815_CAEEL/319-365,CHD3_CAEEL/330-375)))),((((YMW5_YEAST/262-309,YA27_SCHPO/265-312),YAC5_SCHPO/119-166),(O88491_MOUSE/1607-1649,O96028_HUMAN/833-875)),((O80922_ARATH/466-509,Q9ZQA2_ARATH/579-622),AIRE_HUMAN/298-343))),((Q9UKX0_HUMAN/271-320,O48579_ARATH/63-108),FALZ_HUMAN/253-298)),((((YJ89_YEAST/237-285,(O64516_ARATH/703-751,(YANC_SCHPO/261-311,YGN1_YEAST/319-369))),(((HAT31_ARATH/205-260,PRH_ARATH/192-247),O24569_MAIZE/211-266),((((((O74759_SCHPO/196-244,PHF16_HUMAN/202-250),Q12311_YEAST/265-313),(Q10652_CAEEL/7-57,AF17_HUMAN/7-57)),(Q17909_CAEEL/309-357,((((YHP0_YEAST/224-271,(O74736_SCHPO/250-297,(O42871_SCHPO/230-277,YNJ7_YEAST/282-329))),(ING1_HUMAN/355-402,Q9HC99_HUMAN/362-409)),(((Q9ZUA9_ARATH/637-685,SET4_YEAST/162-210),(Q19511_CAEEL/29-75,Q18605_CAEEL/61-106)),YGN1_YEAST/1040-1097)),(((YM42_YEAST/1240-1290,(RBBP2_HUMAN/1163-1218,(O94800_HUMAN/98-144,JD1C_HUMAN/1187-1250))),(Q03012_YEAST/24-72,O74508_SCHPO/120-168)),(((((Q08923_YEAST/74-123,(((Q02316_LENED/129-178,SET3_YEAST/119-166),(O95038_HUMAN/120-166,YDBB_SCHPO/5-51)),(O44498_CAEEL/820-866,YKA5_YEAST/74-134))),(Q43479_HORVU/147-196,O65462_ARATH/115-164)),(((O93321_FUGRU/815-868,((MLL4_HUMAN/1337-1396,HRX_HUMAN/1568-1627),TRX_DROME/1423-1482)),LIN59_CAEEL/969-1027),O45407_CAEEL/217-266)),DATF1_HUMAN/270-322),(PHF3_HUMAN/719-772,(RBBP2_HUMAN/1647-1693,((O81488_ARATH/197-247,O49216_ORYSA/217-267),O45410_CAEEL/172-221)))))))),(MTF2_MOUSE/2-55,((O17006_CAEEL/149-202,PHF1_MOUSE/89-142),TF1B_MOUSE/627-672))),(YAJ8_SCHPO/234-288,P87233_SCHPO/192-246)))),(BAZ1B_HUMAN/1186-1234,((O96028_HUMAN/669-713,O88491_MOUSE/1443-1487),Q9Z1H6_MOUSE/322-371))),(Q23541_CAEEL/321-371,(JD1C_HUMAN/326-374,RBBP2_HUMAN/295-343)))),(Q9ZW00_ARATH/627-670,O80659_ARATH/970-1018)),O94400_SCHPO/124-170),(MLL2_HUMAN/1104-1155,O93321_FUGRU/688-739)),((MYST3_HUMAN/208-265,DPF1_HUMAN/229-284),YP99_CAEEL/256-314)),(O93321_FUGRU/214-262,MLL2_HUMAN/228-276)),(HRX_HUMAN/1433-1482,MLL4_HUMAN/1203-1252)),TRX_DROME/1268-1347,TRX_DROVI/1253-1334);
((((((((((((BAZ2A_HUMAN/1651-1699:0.39592,((CHD3_CAEEL/267-312:0.17333,Q19815_CAEEL/258-303:0.17464):0.11556,CHD3_HUMAN/381-426:0.17266):0.10881):0.12312,((CHDM_DROME/439-484:0.22484,CHD3_DROME/37-82:0.25113):0.08120,(CHD4_HUMAN/451-496:0.13215,(Q19815_CAEEL/319-365:0.36376,CHD3_CAEEL/330-375:0.13013):0.26494):0.05471):0.10804):0.05751,((((YMW5_YEAST/262-309:0.21382,YA27_SCHPO/265-312:0.26945):0.14577,YAC5_SCHPO/119-166:0.49438):0.20765,(O88491_MOUSE/1607-1649:0.11924,O96028_HUMAN/833-875:0.16089):0.25449):0.11047,((O80922_ARATH/466-509:0.31061,Q9ZQA2_ARATH/579-622:0.27988):0.12904,AIRE_HUMAN/298-343:0.36405):0.08854):0.09702):0.08497,((Q9UKX0_HUMAN/271-320:0.44050,O48579_ARATH/63-108:0.22873):0.13712,FALZ_HUMAN/253-298:0.32245):0.04954):0.14365,((((YJ89_YEAST/237-285:0.39165,(O64516_ARATH/703-751:0.36823,(YANC_SCHPO/261-311:0.58867,YGN1_YEAST/319-369:0.32758):0.19579):0.16287):0.07021,(((HAT31_ARATH/205-260:0.17127,PRH_ARATH/192-247:0.28687):0.14624,O24569_MAIZE/211-266:0.06457):0.38203,((((((O74759_SCHPO/196-244:0.25243,PHF16_HUMAN/202-250:0.38938):0.06604,Q12311_YEAST/265-313:0.32417):0.05200,(Q10652_CAEEL/7-57:0.16644,AF17_HUMAN/7-57:0.47157):0.20143):0.12615,(Q17909_CAEEL/309-357:0.49628,((((YHP0_YEAST/224-271:0.14801,(O74736_SCHPO/250-297:0.15787,(O42871_SCHPO/230-277:0.22413,YNJ7_YEAST/282-329:0.21335):0.10577):0.07422):0.04792,(ING1_HUMAN/355-402:0.35532,Q9HC99_HUMAN/362-409:0.10049):0.18461):0.09467,(((Q9ZUA9_ARATH/637-685:0.48893,SET4_YEAST/162-210:0.36757):0.15061,(Q19511_CAEEL/29-75:0.28322,Q18605_CAEEL/61-106:0.33635):0.25078):0.12209,YGN1_YEAST/1040-1097:0.58209):0.15169):0.06306,(((YM42_YEAST/1240-1290:0.42165,(RBBP2_HUMAN/1163-1218:0.10485,(O94800_HUMAN/98-144:0.45801,JD1C_HUMAN/1187-1250:0.44205):0.17832):0.32582):0.09273,(Q03012_YEAST/24-72:0.44612,O74508_SCHPO/120-168:0.11613):0.12004):0.12887,(((((Q08923_YEAST/74-123:0.26502,(((Q02316_LENED/129-178:0.49297,SET3_YEAST/119-166:0.26393):0.06904,(O95038_HUMAN/120-166:0.32200,YDBB_SCHPO/5-51:0.25920):0.06746):0.08486,(O44498_CAEEL/820-866:0.30659,YKA5_YEAST/74-134:0.39820):0.21544):0.13923):0.19541,(Q43479_HORVU/147-196:0.21965,O65462_ARATH/115-164:0.12360):0.19190):0.14671,(((O93321_FUGRU/815-868:0.57829,((MLL4_HUMAN/1337-1396:0.21228,HRX_HUMAN/1568-1627:0.19435):0.07428,TRX_DROME/1423-1482:0.28701):0.13173):0.11051,LIN59_CAEEL/969-1027:0.52053):0.05588,O45407_CAEEL/217-266:0.47125):0.13872):0.13543,DATF1_HUMAN/270-322:0.25462):0.05486,(PHF3_HUMAN/719-772:0.28040,(RBBP2_HUMAN/1647-1693:0.52194,((O81488_ARATH/197-247:0.16373,O49216_ORYSA/217-267:0.15417):0.28302,O45410_CAEEL/172-221:0.25885):0.09631):0.05183):0.06938):0.11519):0.14546):0.07754):0.25496):0.08397,(MTF2_MOUSE/2-55:0.19763,((O17006_CAEEL/149-202:0.54213,PHF1_MOUSE/89-142:0.42162):0.11502,TF1B_MOUSE/627-672:0.48650):0.14814):0.16213):0.03216,(YAJ8_SCHPO/234-288:0.26389,P87233_SCHPO/192-246:0.31377):0.24117):0.18344):0.07660):0.07091,(BAZ1B_HUMAN/1186-1234:0.26429,((O96028_HUMAN/669-713:0.20328,O88491_MOUSE/1443-1487:0.16091):0.44131,Q9Z1H6_MOUSE/322-371:0.17398):0.21495):0.10011):0.06852,(Q23541_CAEEL/321-371:0.37151,(JD1C_HUMAN/326-374:0.32966,RBBP2_HUMAN/295-343:0.09818):0.16234):0.08527):0.11703):0.08394,(Q9ZW00_ARATH/627-670:0.36083,O80659_ARATH/970-1018:0.56821):0.09303):0.15064,O94400_SCHPO/124-170:0.44560):0.18405,(MLL2_HUMAN/1104-1155:0.15343,O93321_FUGRU/688-739:0.14355):0.46194):0.09744,((MYST3_HUMAN/208-265:0.29924,DPF1_HUMAN/229-284:0.24602):0.14253,YP99_CAEEL/256-314:0.32176):0.21721):0.03496,(O93321_FUGRU/214-262:0.22339,MLL2_HUMAN/228-276:0.13576):0.21209):0.20416,(HRX_HUMAN/1433-1482:0.31068,MLL4_HUMAN/1203-1252:0.10195):0.30772):0.23005,TRX_DROME/1268-1347:0.14478,TRX_DROVI/1253-1334:0.10221);