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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00628 phylogeny
for amino acid alignment


 
((((((((((((((((((((Q9ZQA2_ARATH/579-622,(O80922_ARATH/466-509,(O96028_HUMAN/669-713,O88491_MOUSE/1443-1487))),(Q19511_CAEEL/29-75,Q18605_CAEEL/61-106)),(O88491_MOUSE/1607-1649,O96028_HUMAN/833-875)),((YMW5_YEAST/262-309,YA27_SCHPO/265-312),YAC5_SCHPO/119-166)),AIRE_HUMAN/298-343),((CHD3_DROME/37-82,O48579_ARATH/63-108),((CHD4_HUMAN/451-496,CHDM_DROME/439-484),Q9ZW00_ARATH/627-670))),((TF1A_HUMAN/828-873,TF1B_MOUSE/627-672),FALZ_HUMAN/253-298)),((CHD3_CAEEL/267-312,Q19815_CAEEL/258-303),CHD3_HUMAN/381-426)),(Q19815_CAEEL/319-365,CHD3_CAEEL/330-375)),(YGN1_YEAST/319-369,PHF14_HUMAN/727-779)),((HAT31_ARATH/205-260,O24569_MAIZE/211-266),PRH_ARATH/192-247)),(((BAZ2A_HUMAN/1651-1699,Q23590_CAEEL/1088-1135),Q9UKX0_HUMAN/271-320),(((O94400_SCHPO/124-170,(Q23541_CAEEL/321-371,(JD1C_HUMAN/326-374,RBBP2_HUMAN/295-343))),(((((O94800_HUMAN/98-144,(RBBP2_HUMAN/1163-1218,JD1C_HUMAN/1187-1250)),Q17909_CAEEL/309-357),(((((((O45410_CAEEL/172-221,(((O81488_ARATH/197-247,O49216_ORYSA/217-267),RBBP2_HUMAN/1647-1693),(O45407_CAEEL/217-266,(Q43479_HORVU/147-196,O65462_ARATH/115-164)))),DATF1_HUMAN/270-322),PHF3_HUMAN/719-772),((O93321_FUGRU/815-868,((MLL4_HUMAN/1337-1396,(O93291_FUGRU/1805-1864,HRX_HUMAN/1568-1627)),TRX_DROME/1423-1482)),(((O44498_CAEEL/820-866,YKA5_YEAST/74-134),LIN59_CAEEL/969-1027),((Q24189_DROME/1843-1887,((YDBB_SCHPO/5-51,Q08923_YEAST/74-123),((Q02316_LENED/129-178,SET3_YEAST/119-166),(Q9ZUA9_ARATH/637-685,SET4_YEAST/162-210)))),O95038_HUMAN/120-166)))),(Q03012_YEAST/24-72,O74508_SCHPO/120-168)),YM42_YEAST/1240-1290),((ING1_HUMAN/355-402,Q9HC99_HUMAN/362-409),(YHP0_YEAST/224-271,(O42871_SCHPO/230-277,(O74736_SCHPO/250-297,YNJ7_YEAST/282-329)))))),(YANC_SCHPO/261-311,O17006_CAEEL/149-202)),((PHF1_MOUSE/89-142,(MTF2_MOUSE/2-55,(YAJ8_SCHPO/234-288,P87233_SCHPO/192-246))),(((PHF14_HUMAN/321-380,YGN1_YEAST/1040-1097),(Q10652_CAEEL/7-57,AF17_HUMAN/7-57)),(O74759_SCHPO/196-244,(Q12311_YEAST/265-313,PHF16_HUMAN/202-250)))))),YJ89_YEAST/237-285))),BAZ1B_HUMAN/1186-1234),Q9Z1H6_MOUSE/322-371),(O64516_ARATH/703-751,O80659_ARATH/970-1018)),((MYST3_HUMAN/208-265,DPF1_HUMAN/229-284),YP99_CAEEL/256-314)),(MLL2_HUMAN/1104-1155,O93321_FUGRU/688-739)),(O93321_FUGRU/214-262,MLL2_HUMAN/228-276)),(HRX_HUMAN/1433-1482,MLL4_HUMAN/1203-1252)),TRX_DROME/1268-1347,TRX_DROVI/1253-1334);
((((((((((((((((((((Q9ZQA2_ARATH/579-622:0.43609,(O80922_ARATH/466-509:0.41568,(O96028_HUMAN/669-713:0.24444,O88491_MOUSE/1443-1487:0.26319):0.61424):0.00000):0.05334,(Q19511_CAEEL/29-75:0.61299,Q18605_CAEEL/61-106:0.22949):0.34259):0.18832,(O88491_MOUSE/1607-1649:0.00000,O96028_HUMAN/833-875:0.26330):0.33560):0.08700,((YMW5_YEAST/262-309:0.22929,YA27_SCHPO/265-312:0.25834):0.15986,YAC5_SCHPO/119-166:0.51020):0.34891):0.23851,AIRE_HUMAN/298-343:0.37456):0.13158,((CHD3_DROME/37-82:0.26788,O48579_ARATH/63-108:0.36329):0.16723,((CHD4_HUMAN/451-496:0.15283,CHDM_DROME/439-484:0.14655):0.00414,Q9ZW00_ARATH/627-670:0.76086):0.15552):0.12231):0.11689,((TF1A_HUMAN/828-873:0.44943,TF1B_MOUSE/627-672:0.59756):0.35041,FALZ_HUMAN/253-298:0.48600):0.18425):0.10005,((CHD3_CAEEL/267-312:0.12135,Q19815_CAEEL/258-303:0.11817):0.24833,CHD3_HUMAN/381-426:0.20632):0.27411):0.10622,(Q19815_CAEEL/319-365:0.36893,CHD3_CAEEL/330-375:0.12068):0.26815):0.07470,(YGN1_YEAST/319-369:0.91082,PHF14_HUMAN/727-779:0.38373):0.43273):0.12075,((HAT31_ARATH/205-260:0.16157,O24569_MAIZE/211-266:0.16190):0.10567,PRH_ARATH/192-247:0.28151):0.75152):0.19823,(((BAZ2A_HUMAN/1651-1699:0.37126,Q23590_CAEEL/1088-1135:0.46575):0.14546,Q9UKX0_HUMAN/271-320:0.72750):0.23442,(((O94400_SCHPO/124-170:0.65388,(Q23541_CAEEL/321-371:0.53660,(JD1C_HUMAN/326-374:0.27826,RBBP2_HUMAN/295-343:0.12202):0.16665):0.07038):0.18060,(((((O94800_HUMAN/98-144:0.53471,(RBBP2_HUMAN/1163-1218:0.35936,JD1C_HUMAN/1187-1250:0.40405):0.12206):0.47040,Q17909_CAEEL/309-357:0.54261):0.20575,(((((((O45410_CAEEL/172-221:0.36011,(((O81488_ARATH/197-247:0.17768,O49216_ORYSA/217-267:0.08992):0.39097,RBBP2_HUMAN/1647-1693:0.89480):0.27023,(O45407_CAEEL/217-266:0.62409,(Q43479_HORVU/147-196:0.25544,O65462_ARATH/115-164:0.13739):0.55404):0.21279):0.08731):0.25066,DATF1_HUMAN/270-322:0.31025):0.00000,PHF3_HUMAN/719-772:0.46768):0.01186,((O93321_FUGRU/815-868:0.88034,((MLL4_HUMAN/1337-1396:0.26064,(O93291_FUGRU/1805-1864:0.33965,HRX_HUMAN/1568-1627:0.09347):0.12056):0.03488,TRX_DROME/1423-1482:0.30071):0.34037):0.35070,(((O44498_CAEEL/820-866:0.51197,YKA5_YEAST/74-134:0.40595):0.13279,LIN59_CAEEL/969-1027:0.84258):0.19324,((Q24189_DROME/1843-1887:0.48961,((YDBB_SCHPO/5-51:0.19999,Q08923_YEAST/74-123:0.56859):0.13532,((Q02316_LENED/129-178:0.72406,SET3_YEAST/119-166:0.41302):0.06489,(Q9ZUA9_ARATH/637-685:0.71833,SET4_YEAST/162-210:0.53882):0.42068):0.10160):0.13713):0.00000,O95038_HUMAN/120-166:0.25088):0.23414):0.42266):0.50200):0.24518,(Q03012_YEAST/24-72:0.73537,O74508_SCHPO/120-168:0.11297):0.24589):0.23825,YM42_YEAST/1240-1290:0.85279):0.09623,((ING1_HUMAN/355-402:0.30850,Q9HC99_HUMAN/362-409:0.02797):0.09731,(YHP0_YEAST/224-271:0.13410,(O42871_SCHPO/230-277:0.23547,(O74736_SCHPO/250-297:0.16261,YNJ7_YEAST/282-329:0.36112):0.08814):0.10447):0.22462):0.32894):0.08206):0.35638,(YANC_SCHPO/261-311:0.89981,O17006_CAEEL/149-202:0.69497):0.30353):0.21624,((PHF1_MOUSE/89-142:0.69945,(MTF2_MOUSE/2-55:0.43838,(YAJ8_SCHPO/234-288:0.40575,P87233_SCHPO/192-246:0.18832):0.33764):0.11291):0.07794,(((PHF14_HUMAN/321-380:0.51876,YGN1_YEAST/1040-1097:0.99804):0.29573,(Q10652_CAEEL/7-57:0.12296,AF17_HUMAN/7-57:0.32644):0.31114):0.21880,(O74759_SCHPO/196-244:0.34085,(Q12311_YEAST/265-313:0.40419,PHF16_HUMAN/202-250:0.38446):0.09652):0.00159):0.33848):0.22666):0.42859):0.04337,YJ89_YEAST/237-285:0.66095):0.14306):0.10128):0.00000,BAZ1B_HUMAN/1186-1234:0.37423):0.20124,Q9Z1H6_MOUSE/322-371:0.36444):0.22345,(O64516_ARATH/703-751:0.48696,O80659_ARATH/970-1018:1.01420):0.28018):0.69010,((MYST3_HUMAN/208-265:0.32861,DPF1_HUMAN/229-284:0.17828):0.17607,YP99_CAEEL/256-314:0.24560):0.52431):0.11450,(MLL2_HUMAN/1104-1155:0.17530,O93321_FUGRU/688-739:0.03573):0.59851):0.20034,(O93321_FUGRU/214-262:0.10733,MLL2_HUMAN/228-276:0.31443):0.30173):0.52221,(HRX_HUMAN/1433-1482:0.25882,MLL4_HUMAN/1203-1252:0.17746):0.57565):0.31936,TRX_DROME/1268-1347:0.00000,TRX_DROVI/1253-1334:0.02262);