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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00623 phylogeny
for restricted amino acid alignment


 
(((((((((((((((Q9AXN0_9EUKA/328-493,((((O77375_PLAF7/375-540,RPB1_CAEEL/350-511),(RPB1_SCHPO/348-513,Q9HGZ5_ASPOR/357-522)),O96446_9MICR/313-476),Q9AVW8_GUITH/327-492)),RPB1_TRYBB/350-513),((((Q9VXP9_DROME/357-524,RPC1_HUMAN/358-525),RPC1_SCHPO/352-519),RPC1_YEAST/370-537),Q9LVH0_ARATH/359-525)),((Q9QTF4_RSIV/277-427,Q26008_PLAFA/731-907),(O17628_CAEEL/473-653,((RPA1_YEAST/473-653,RPA1_HUMAN/434-614),RPA1_DROME/416-591)))),RPO1_ASFB7/316-483),Q98RN1_GUITH/314-480),Q9AW39_GUITH/417-601),Q9AIH0_CARRU/318-460),O21238_RECAM/354-506),RPOC_THEMA/635-779),((RPOC_BORBU/333-475,RPOC_TREPA/333-475),RPOC_AQUAE/474-616)),RPOC_THEAQ/620-765),RPOC_CHLTR/347-489),RPOC_MYCPU/418-560),RPOC_MYCGE/407-558,RPOC_UREPA/402-553);
(((((((((((((((Q9AXN0_9EUKA/328-493:0.21341,((((O77375_PLAF7/375-540:0.27782,RPB1_CAEEL/350-511:0.19592):0.05894,(RPB1_SCHPO/348-513:0.11274,Q9HGZ5_ASPOR/357-522:0.12965):0.06331):0.07599,O96446_9MICR/313-476:0.25285):0.05249,Q9AVW8_GUITH/327-492:0.25143):0.07718):0.08156,RPB1_TRYBB/350-513:0.35494):0.17721,((((Q9VXP9_DROME/357-524:0.16540,RPC1_HUMAN/358-525:0.13146):0.08642,RPC1_SCHPO/352-519:0.17163):0.08485,RPC1_YEAST/370-537:0.19054):0.08321,Q9LVH0_ARATH/359-525:0.27831):0.09994):0.08601,((Q9QTF4_RSIV/277-427:0.69403,Q26008_PLAFA/731-907:0.45789):0.14490,(O17628_CAEEL/473-653:0.47868,((RPA1_YEAST/473-653:0.27229,RPA1_HUMAN/434-614:0.22163):0.14473,RPA1_DROME/416-591:0.16711):0.08421):0.22919):0.13787):0.12319,RPO1_ASFB7/316-483:0.85879):0.07510,Q98RN1_GUITH/314-480:0.36205):0.27592,Q9AW39_GUITH/417-601:0.56417):0.69052,Q9AIH0_CARRU/318-460:0.30955):0.21483,O21238_RECAM/354-506:0.44420):0.27676,RPOC_THEMA/635-779:0.21585):0.05930,((RPOC_BORBU/333-475:0.14472,RPOC_TREPA/333-475:0.13163):0.09762,RPOC_AQUAE/474-616:0.16035):0.03192):0.05372,RPOC_THEAQ/620-765:0.22691):0.08114,RPOC_CHLTR/347-489:0.13532):0.20200,RPOC_MYCPU/418-560:0.18376):0.18331,RPOC_MYCGE/407-558:0.13593,RPOC_UREPA/402-553:0.13077);