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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00623 alignment
(35 sequences with 189 aa)


RPB1_CAEEL/350-511 GKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAK-----ENGARVDLRYHPR.A.....ADLHLQPGY-.-.--.....--RVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPW-..STFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMV
Q9HGZ5_ASPOR/357-522 GKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPGARYI-VRDNGERIDLRHAKR.A.....GGQQLLYGW-.-.--.....--KVERHVMDGDVILFNRQPSLHKESMMGHRVRVMPY-..STFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELLQLALV
RPB1_SCHPO/348-513 GKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYI-IRDTGERIDLRYHKR.A.....GDIPLRYGW-.-.--.....--RVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPY-..STFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMV
O77375_PLAF7/375-540 GKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNYDNLKKLVERGPYEWPGAKYI-IRDNGTKYDLRHVRR.N.....SEKELEYGY-.-.--.....--KVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPY-..STFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIV
Q9AXN0_9EUKA/328-493 GKRVDFSGRTVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAKYI-ERLDGSKVNLAFVKN.R.....SDIHLNNGE-.-.--.....--KVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVMRY-..SSFRLNLSCTSPYNADFDGDEMNLHVPQSPQARAEVMQLMMV
O96446_9MICR/313-476 GKRVDFSARSVITPDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYV-IRNDGQRIDLNFNR-.-.....GDIKLEEGY-.-.--.....--VVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVMEG-..KTFRLNLSCVSPYNADFDGDEMNLHMPQSYNSKAELEELCLV
Q9AVW8_GUITH/327-492 GKRVDFSARTVITPDPNIKLDELGVPLSIAMNLTFPEIVTSFNIEYMKFLLYNGPYKHPGAKYL-IRNDNNRIDLRYVKY.L.....SNINLENGY-.-.--.....--CVERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKF-..STFRLNLSATSPYNADFDGDEMNLHFPQNVESKSELKNLLMV
RPB1_TRYBB/350-513 GKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARR--TVYPSANYI-HHPNGTITKLALLRD.R.....SKVTLNIGD-.-.--.....--VVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNY-..NTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMV
Q9LVH0_ARATH/359-525 GKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPD-GSSRTLVGDYRkR.....IADELAIGC-.-.--.....--IVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPW-..RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGV
RPC1_YEAST/370-537 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRmK.....LAKNLQIGD-.-.--.....--VVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPW-..RTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV
RPC1_SCHPO/352-519 GKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGANYVIDRESGFKRFLRFGNRnR.....IADDLKIGD-.-.--.....--IVERHLHDNDVVLFNRQPSLHKLSIMAHLVKVRPW-..RTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGI
RPC1_HUMAN/358-525 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNReK.....MAQELKYGD-.-.--.....--IVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPH-..RTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGT
Q9VXP9_DROME/357-524 GKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNReK.....VAQELKCGD-.-.--.....--VVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQ-..RTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGN
Q18566_CAEEL/354-521 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRdE.....LAKNLRMGD-.-.--.....--TIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPG-..RTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNV
Q98RN1_GUITH/314-480 GKRVDFSARTVISPDPNLFLSQIGIPIIICKNLSFPEKLNFYNYERLKRCILRGNDRYPGVVSVITRD-NKKIFLNKSNKkN.....MMFFSKIGN-.-.--.....--SIQRHLVKNDIILFNRQPSLHRLSIMAHRIRIFKE-..KTFRLNHCVCKPYNADFDGDEMNLHVPQSETSRTEAITLLNS
RPA1_HUMAN/434-614 GKRVDSTARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMV-INEDGSRTALSAVDMtQr..eaVAKQLLTPATgApKPq...gTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEE..KVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACT
RPA1_DROME/416-591 GKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYI-QDKNGFTTYIPADNAsKr..esLAKLLLS---.NpKD....gIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGE..KTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNV
RPA1_YEAST/473-653 GKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQI-QNEDGSLVSLIGMSVeQr..kaLANQLLTPSSnVsTHt...lNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNE..KTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANT
O17628_CAEEL/473-653 GKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFF-VEPSGKKTMLGDKPEeKkrrmqMAKTLNAATTeNlRQ.....TPKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQ..RALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANV
Q26008_PLAFA/731-907 GKRVNNCARTVISPDTFIETNQIGMPIEFAKVLTIDEYITQNNFTYIKKLIENGPNIYPGALSY-RDSNGRVFKLSHKYEdRl...kVIEKIEKLNFqTeNS.....-YILHRHARDGDVVIMNRQPTLHKFSIMAHYLKIFEKE..KVFRLNYVNCSSYNADFDGDEMNLHLLQTPLARAEATHLMNC
Q9QTF4_RSIV/277-427 GKRRNYTARSVVGPESTLALDQVGVPPQVADTLTIEEPVTKYNIEHVRRMRATGHLKA------LYDVDGQVRHVVRC--.-.....----------.-.--.....GLTLHRSLRDGDVVVLNRQPTLHRNSMLGMRVKVLPG-..NTIRVNLAVTHGFNMDFDGDEGNLYLPRSLSARAEVATLMSP
Q9AW39_GUITH/417-601 GKRVLNSARSVIAPDPFLKTFEVGVPKEFAKDLYVPESINLINILKVFLDFLKIKNFKKKKL-ILEILNGNKISISQQDFlFkl.kkISISYKYFKLfSlFSknkygFNKFLRNLKKNDISILNRQPSLHKTSIMAHKVRILKSS..KCLKLHYSNCNSYNADFDGDEMNLHIPQNYLSISESLYIAYV
RPO1_ASFB7/316-483 GSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRLMPYFLNGKRQYPGCSRVYKQITQSVHDIEGLKQ.-.....-DFRLEVGD-.-.--.....--ILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLENPkiSTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSV
RPOC_UREPA/402-553 GKRVDYSGRSVIVVGPELKMYEVGIPALMILKLFRPYIISELIRKRDELGNEIQPICA--------NIKLAEQKILAQ--.-.....-DNEIW----.-.--.....--PVVEKVIKQRPVILNRAPTLHRLGIQAFEPKMVDG-..KAIRLHPLVTTAFNADFDGDQMAVHIPLSKEAVAEARSILLA
RPOC_MYCGE/407-558 GKRVDYSGRSVIVVGPELKMYEVGIPALMILKLFKPFIIHGLINKFDENGNEIRPIAA--------SIRQAEDMIKNQ--.-.....-DDLIW----.-.--.....--GIVYDVIKDRPVLLNRAPTLHRLGIQAFEPRIVDG-..KAIRLHPLVTTAFNADFDGDQMAVHVPLSENAVNEARAVLLA
RPOC_MYCPU/418-560 GKRVDYSGRSVIVVGPELKMNQVGIPREMAAKLFEPWIIKELID---------QEITL--------SVKSARKLIDNL--.-.....-NPIIW----.-.--.....--PHVAKVIQGRPVLLNRAPTLHRLSIQAFEPVLIRG-..KAIKLHPLVTTAFNADFDGDQMAVHVPISDEAVREAKELLFA
RPOC_CHLTR/347-489 GKRVDYSGRSVIIVGPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVY-----------------TIRSAKKMIQRG--.-.....-APEVW----.-.--.....--DVLEEIIKGHPVLLNRAPTLHRLGIQAFEPVLIEG-..KAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMA
RPOC_TREPA/333-475 GKRVDYSGRSVIVVGPELKLWQCGLPTKMALELFKPFIMKKLVEKEIVS-----------------NIKKAKMLVEQE--.-.....-SPKVF----.-.--.....--SVLDEVVKEHPVMLNRAPTLHRLGIQAFEPVLVEG-..KAIRLHPLVCKPFNADFDGDQMAVHVPLTQAAQMECWTLMLS
RPOC_BORBU/333-475 GKRVDYSGRSVIVVGPELKLHQCGLPAKMALELFKPFVIRRLIESEAVF-----------------NIKRAKNLIEQE--.-.....-VDEVW----.-.--.....--QILDLVIKEHPILLNRAPTLHRLGIQAFEPVLVEG-..KAIKLHPLVCHAYNADFDGDQMAVHVPLTPAAQAESWALMLS
RPOC_AQUAE/474-616 GKRVDYSGRSVIVVGPELQMHQCGLPKIMALELFKPFVYRRLEEKGYAT-----------------SIKHAKRLVEQK--.-.....-TPEVW----.-.--.....--ECLEEVVKEHPVLLNRAPTLHRPSIQAFEPVLVEG-..KAIQLHPLVCPPFNADFDGDQMAVHVPLGIEAQLESYILMLS
RPOC_XYLFA/344-486 GKRVDYSARSVIIVGPNLRLHQCGLPKKMALELFKPFVFAKLQRRGLAT-----------------TIKAAKKLVERE--.-.....-EAEVW----.-.--.....--DILEEVISEHPVVLNRAPTLHRQGIQAFEPVLIEG-..KAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARALMMS
RPOC_THEAQ/620-765 GKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKAFAP-----------------NVKAARRMLERQRD.-.....IKDEVW----.-.--.....--DALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEG-..QSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLS
RPOC_THEMA/635-779 GKRVDYSGRAVIVVGPNLKIHQCGIPKKMAMELFKPFVLAKLLGEGSSSK----------------TMRKVKKAIIEK--.-.....EMPEAW----.-.--.....--EVLEEVIKGSVVLLNRAPTLHRMSIQAFEPKLVEG-..NAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLS
Q9AIH0_CARRU/318-460 GKRVDFSGRSVITVEPNLFLYECKIPIYIALELFKPILYYELKKKKIITTIS-FIDDY--------YKKNKKQIIL----.-.....----------.-.--.....---LLKNKVKSYFIMLNRAPTLHRMNFQSFKILLTED-..KTIKIHPLVCLSYNADFDGDQMAIHLPLTNNAKVESNYLLLS
O21238_RECAM/354-506 GKRINFSGRTVITSGPRLHLNQCGLPIELVLELFKPFIILKMRDLNICSQTS-LKNLK--------TYDDFKQILFNKF-.-.....TINLVF----.-.--.....--KLINSIISKHPVLLNRAPTLHRMNIQTFSPLLIYT-..KAIQLHPLVCSSFNADFDGDTMAIYIPHTLRSQIESRVLMMS