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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00623 phylogeny
for amino acid alignment


 
(((((((((((((((Q9AXN0_9EUKA/328-493,((((O77375_PLAF7/375-540,RPB1_CAEEL/350-511),(RPB1_SCHPO/348-513,Q9HGZ5_ASPOR/357-522)),O96446_9MICR/313-476),Q9AVW8_GUITH/327-492)),RPB1_TRYBB/350-513),((RPC1_YEAST/370-537,(((Q9VXP9_DROME/357-524,RPC1_HUMAN/358-525),RPC1_SCHPO/352-519),Q18566_CAEEL/354-521)),Q9LVH0_ARATH/359-525)),((Q9QTF4_RSIV/277-427,Q26008_PLAFA/731-907),(O17628_CAEEL/473-653,((RPA1_YEAST/473-653,RPA1_HUMAN/434-614),RPA1_DROME/416-591)))),RPO1_ASFB7/316-483),Q98RN1_GUITH/314-480),Q9AW39_GUITH/417-601),Q9AIH0_CARRU/318-460),O21238_RECAM/354-506),RPOC_THEMA/635-779),RPOC_THEAQ/620-765),(RPOC_XYLFA/344-486,(RPOC_AQUAE/474-616,(RPOC_BORBU/333-475,RPOC_TREPA/333-475)))),RPOC_CHLTR/347-489),RPOC_MYCPU/418-560),RPOC_MYCGE/407-558,RPOC_UREPA/402-553);
(((((((((((((((Q9AXN0_9EUKA/328-493:0.20767,((((O77375_PLAF7/375-540:0.27862,RPB1_CAEEL/350-511:0.19508):0.05810,(RPB1_SCHPO/348-513:0.11288,Q9HGZ5_ASPOR/357-522:0.12974):0.06401):0.07888,O96446_9MICR/313-476:0.25106):0.05505,Q9AVW8_GUITH/327-492:0.24671):0.07987):0.08036,RPB1_TRYBB/350-513:0.35985):0.16418,((RPC1_YEAST/370-537:0.19313,(((Q9VXP9_DROME/357-524:0.16556,RPC1_HUMAN/358-525:0.13021):0.07356,RPC1_SCHPO/352-519:0.18663):0.06861,Q18566_CAEEL/354-521:0.23475):0.07101):0.04853,Q9LVH0_ARATH/359-525:0.30349):0.09746):0.09435,((Q9QTF4_RSIV/277-427:0.69520,Q26008_PLAFA/731-907:0.46310):0.14969,(O17628_CAEEL/473-653:0.47918,((RPA1_YEAST/473-653:0.27188,RPA1_HUMAN/434-614:0.22158):0.14629,RPA1_DROME/416-591:0.16570):0.08427):0.21799):0.13474):0.13460,RPO1_ASFB7/316-483:0.85542):0.07725,Q98RN1_GUITH/314-480:0.36381):0.26970,Q9AW39_GUITH/417-601:0.57052):0.68708,Q9AIH0_CARRU/318-460:0.32189):0.20306,O21238_RECAM/354-506:0.45488):0.27499,RPOC_THEMA/635-779:0.22421):0.08412,RPOC_THEAQ/620-765:0.21807):0.02862,(RPOC_XYLFA/344-486:0.16100,(RPOC_AQUAE/474-616:0.15986,(RPOC_BORBU/333-475:0.15092,RPOC_TREPA/333-475:0.12705):0.10785):0.05194):0.03244):0.08309,RPOC_CHLTR/347-489:0.11973):0.21484,RPOC_MYCPU/418-560:0.17700):0.19007,RPOC_MYCGE/407-558:0.13034,RPOC_UREPA/402-553:0.13765);