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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00623 - RNA_pol_Rpb1_2)
RNA polymerase Rpb1, domain 2
(Pfam reference: accession no. PF00623)
(Interpro reference: accession no. IPR000722)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
35 sequences @ 189 aa
(ave. pairwise identity: 0.43)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 13.71)
nucleotides
(available for above)
33 sequences @ 567 bp
(ave. pairwise identity: 0.49)
New Hampshire format
(total tree length: 12.28)
amino acids, restricted set
(corresp. to available nt seqs)
33 sequences @ 189 aa
(ave. pairwise identity: 0.43)
New Hampshire format
(total tree length: 13.16)