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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00595 alignment
(59 sequences with 114 aa)


PRC_ECOLI/238-320 NTEMSL-..-SLEGIGAVLQMDDD-.................YTVINSMVAG.-GPAAKSKAISVGDKIVGV..GQtgkpmVDVIGW.RLDDVVALIKGPKG....SKVRLEIL
PRC_HAEIN/244-328 SFNESIN..LSLEGIGTTLQSEDD-.................EISIKSLVPG.-APAERSKKLHPGDKIIGV..GQatgdiEDVVGW.RLEDLVEKIKGKKG....TKVRLEIE
YPEB_SYNP2/102-182 SLKVSTS..GELSGVGLQINVNPEV................dVLEVILPLPG.-SPAEAAG-IEAKDQILAI..DG.....IDTRNI.GLEEAAARMRGKKG....STVSLTVK
SP4B_BACSU/103-183 DLKVIP-..-GGQSIGVKLHSVGVL................vGFHQINTSEGkKSPGETAG-IEAGDIIIEM..NG.....QKIEKM.NDVAPFIQKAGKTG....ESLDLLIK
ZO1_MOUSE/186-261 KVTLVKS..RKNEEYGLRPAS----.................HIFVKEISQD.-SLAARDGDIQEGDVVLKI..NG.....TVTENM.SLTDAKTLIERSKG....-KLKMVVQ
ZO1_HUMAN/174-249 KVTLVKS..RKNEEYGLRLAS----.................HIFVKEISQD.-SLAARDGNIQEGDVVLKI..NG.....TVTENM.SLTDAKTLIERSKG....-KLKMVVQ
ZO1_HUMAN/411-489 KLVKFR-..-KGDSVGLRLAGGNDV.................GIFVAGVLED.SPAAKEG--LEEGDQILRV..NN.....VDFTNI.IREEAVLFLLDLPK...gEEVTILAQ
ZO1_MOUSE/423-501 KLVKFR-..-KGDSVGLRLAGGNDV.................GIFVAGVLED.SPAAKEG--LEEGDQILRV..NN.....VDFTNI.IREEAVLFLLDLPK...gEEVTILAQ
ZO1_HUMAN/11-95 TVTLHRA..-PGFGFGIAISGGRDNphfq.........sgetSIVISDVLKG.-GPAEGQ--LQENDRVAMV..NG.....VSMDNV.EHAFAVQQLRKSGK....-NAKITIR
ZO1_MOUSE/23-107 TVTLHRA..-PGFGFGIAISGGRDNphfq.........sgetSIVISDVLKG.-GPAEGQ--LQENDRVAMV..NG.....VSMDNV.EHAFAVQQLRKSGK....-NAKITIR
DLG4_RAT/313-391 RIVIHR-..-GSTGLGFNIVGGEDG................eGIFISFILAG.-GPADLSGELRKGDQILSV..NG.....VDLRNA.SHEQAAIALKNAGQ....-TVTIIAQ
DLG1_DROME/506-584 TITIQK-..-GPQGLGFNIVGGEDG................qGIYVSFILAG.-GPADLGSELKRGDQLLSV..NN.....VNLTHA.THEEAAQALKTSGG....-VVTLLAQ
DLG4_RAT/160-244 EIKLIK-..-GPKGLGFSIAGGVGNqhi..........pgdnSIYVTKIIEG.-GAAHKDGRLQIGDKILAV..NS.....VGLEDV.MHEDAVAALKNTYD....-VVYLKVA
DLG1_DROME/330-418 EIDLVK-..-GGKGLGFSIAGGIGNqhi..........pgdnGIYVTKLMDG.-GAAQVDGRLSIGDKLIAVrtNGs...eKNLENV.THELAVATLKSITD....-KVTLIIG
DLG4_RAT/65-149 EITLER-..-GNSGLGFSIAGGTDNphi..........gddpSIFITKIIPG.-GAAAQDGRLRVNDSILFV..NE.....VDVREV.THSAAVEALKEAGS....-IVRLYVM
DLG1_DROME/216-300 DIQLER-..-GNSGLGFSIAGGTDNphi..........gtdtSIYITKLISG.-GAAAADGRLSINDIIVSV..ND.....VSVVDV.PHASAVDALKKAGN....-VVKLHVK
DVL2_XENLA/254-339 TVTLNME..-KYNFLGISIVGQSNErg.............dgGIYIGSIMKG.-GAVAADGRIEPGDMLLQV..ND.....INFENM.SNDDAVRVLRDIVHk..pGPIVLTVA
DVL1_MOUSE/251-336 TVTLNME..-RHHFLGISIVGQSNDrg.............dgGIYIGSIMKG.-GAVAADGRIEPGDMLLQV..ND.....VNFENM.SNDDAVRVLREIVSq..tGPISLTVA
DVLL_HUMAN/251-336 TVTLNME..-RHHFLGICIVGQSNDrg.............dgGIYIGSIMKG.-GAVAADGRIEPGDMLLQV..ND.....VNFENM.SNDDAVRVLREIVSq..tGPISLTVA
DSH_DROME/252-337 TVSINME..-AVNFLGISIVGQSNRgg.............dgGIYVGSIMKG.-GAVALDGRIEPGDMILQV..ND.....VNFENM.TNDEAVRVLREVVQk..pGPIKLVVA
AFAD_HUMAN/993-1073 TVTLK--..-KQNGMGLSIVAAKGAgq............dklGIYVKSVVKG.-GAADDG-RLAAGDQLLSV..DG.....RSLVGL.SQERAAELMTRTSS....-VVTLEVA
APBA2_MOUSE/591-663 TVLIKRP..DLKYQLGFSV------.................RWIICSLMRG.-VLQERGG-VRVGHRIIEI..NG.....QSVVAT.AHEKIVQALSNSVG....-EIHMKTM
APBA1_HUMAN/746-820 TTVLIRR.pDLRYQLGFSVQ-----.................NGIICSLMRG.-GIAERGG-VRVGHRIIEI..NG.....QSVVAT.PHEKIVHILSNAVG....-EIHMKTM
APBA2_MOUSE/500-584 ELQLEKH..-KGEILGVVVVESGWGsi.............lpTVILANMMNG.-GPAARSGKLSIGDQIMSI..NG.....TSLVGL.PLATCQGIIKGLKN...qTQVKLNIV
APBA1_HUMAN/656-740 DVFIEKQ..-KGEILGVVIVESGWGsi.............lpTVIIANMMHG.-GPAEKSGKLNIGDQIMSI..NG.....TSLVGL.PLSTCQSIIKGLEN...qSRVKLNIV
NOS1_RAT/17-96 SVRLFKR..-KVGGLGFLVKERVSK................pPVIISDLIRG.-GAAEQSGLIQAGDIILAV..ND.....RPLVDL.SYDSALEVLRGIAS....-ETHVVLI
NOS1_HUMAN/17-96 SVRLFKR..-KVGGLGFLVKERVSK................pPVIISDLIRG.-GAAEQSGLIQAGDIILAV..NG.....RPLVDL.SYDSALEVLRGIAS....-ETHVVLI
PDLI4_RAT/4-81 --AVTLR..-GPSPWGFRLVGGRDFs...............aPLTISRVHAG.SKAALAA--LCPGDSIQAI..NG.....ESTELM.THLEAQNRIKGCHD....-HLTLSVS
PDLI4_HUMAN/4-81 SVTLR--..-GPSPWGFRLVGGRDFs...............aPLTISRVHAG.SKAALAA--LCPGDLIQAI..NG.....ESTELM.THLEAQNRIKGCHD....-HLTLSVS
PDLI1_RAT/5-82 QIVLQ--..-GPGPWGFRLVGGKDFe...............qPLAISRVTPG.-SKAAIAN-LCIGDLITAI..DG.....EDTSSM.THLEAQNKIKGCVD....-NMTLTVS
PTP1_CAEEL/616-703 VTIKMRP..DRHGRFGFNVKGGADQn...............yPVIVSRVAPG.SSADKCQPRLNEGDQVLFI..DG.....RDVSTM.SHDHVVQFIRSARSglngGELHLTIR
PTN4_HUMAN/516-602 VLIRMKP..DENGRFGFNVKGGYDQk...............mPVIVSRVAPG.TPADLCVPRLNEGDQVVLI..NG.....RDIAEH.THDQVVLFIKASCEr.hsGELMLLVR
PTN3_HUMAN/510-595 LIRITPD..-EDGKFGFNLKGGVDQk...............mPLVVSRINPE.SPADTCIPKLNEGDQIVLI..NG.....RDISEH.THDQVVMFIKASREs.hsRELALVIR
LIN2_CAEEL/546-624 LVQFQKD..-TQEPMGITLKVNEDG.................RCFVARIMHG.-GMIHRQATLHVGDEIREI..NG.....MSVANR.SVESLQEMLRDARG....-QVTFKII
EM55_HUMAN/71-149 LIQFEKV..-TEEPMGITLKLNEKQ.................SCTVARILHG.-GMIHRQGSLHVGDEILEI..NG.....TNVTNH.SVDQLQKAMKETKG....-MISLKVI
EM55_FUGRU/73-151 EVAFEKN..-QSEPLGVTLKLNDKQ.................RCSVARILHG.-GMIHRQGSLHEGDEIAEI..NG.....KSVANQ.TVDQLQKILKETNG....-VVTMKII
YYXA_BACSU/285-380 --DLERYgkVKRPFLGIEMKSLSDIasyhwdetlklpknvtnGAVVMGVDAF.-SPAGKAG-LKELDVITEF..DG.....YKVNDI.VDLRKRLYQKKVGD....-RVKVKFY
YAEL_HAEIN/202-273 DPEKES-..-AFEALGIMPMRPKI-.................EMVLSKVVQN.-SPAEKAG-LQIGDKILKE..NL.....TALP--.WQDFIKQVEQGE--....-SFSIKVE
ECFE_ECOLI/203-277 EPDKED-..-PVSSLGIRPRGPQI-.................EPVLENVQPN.-SAASKAG-LQAGDRIVKV..DG.....QPLTQW.-VTFVMLVRDNPGK....-SLALEIE
DEGP_SALTY/386-464 QSQVDS-..-STIFSGIEGAEMSNKgq.............dkGVVVSSVKAN.SPAAQIG--LKKGDVIIGA..NQ.....QPVKNI.AELRKILDSKPS--....-VLALNIQ
DEGP_ECOLI/387-463 --QVDS-..-SSIFNGIEGAEMSNKgk.............dqGVVVNNVKTG.TPAAQIG--LKKGDVIIGA..NQ.....QAVKNI.AELRKVLDSKPS--....-VLALNIQ
HTOA_HAEIN/377-455 QLSSKTE..-LPALDGATLKDYDAKg..............vkGIEITKIQPN.SLAAQRG--LKSGDIIIGI..NR.....QMIENI.RELNKVLETEPS--....-AVALNIL
DEGQ_ECOLI/365-444 SASAEMI..-TPALEGATLSDGQLKdg.............gkGIKIDEVVKG.SPAAQAG--LQKDDVIIGV..NR.....DRVNSI.AEMRKVLAAKPA--....-IIALQIV
DEGP_SALTY/280-369 QMVEYGQ..VKRGELGIMGTELNSElakam......kvdaqrGAFVSQVMPN.SSAAKAG--IKAGDVITSL..NG.....KPISSF.AALRAQVGTMPVGS....-KISLGLL
DEGP_ECOLI/279-368 QMVEYGQ..VKRGELGIMGTELNSElakam......kvdaqrGAFVSQVLPN.SSAAKAG--IKAGDVITSL..NG.....KPISSF.AALRAQVGTMPVGS....-KLTLGLL
DEGQ_ECOLI/257-346 QLIDFGE..IKRGLLGIKGTEMSADiakaf......nldvqrGAFVSEVLPG.SGSAKAG--VKAGDIITSL..NG.....KPLNSF.AELRSRIATTEPGT....-KVKLGLL
HTOA_HAEIN/268-358 QQILEFG.qVRRGLLGIKGGELNADlakaf......nvsaqqGAFVSEVLPK.-SAAEKAG-LKAGDIITAM..NG.....QKISSF.AEIRAKIATTGAGK....-EISLTYL
DEGP_BARHE/289-378 QQLIEKG.lVQRGWLGVQIQPVTKEisdsi......glkeakGALITDPLKG.-PAAKAG--IKAGDVIISV..NG.....EKINDV.RDLAKRIANMSPGE....-TVTLGVW
DEGS_HAEIN/242-322 KIMRDGR..VIRGYFGVQSDISSSSe...............eGIVITDVSPN.SPAAKSG--IQVGDVILKL..NN.....QEGISA.REMMQIIANTKPNS....-KVLVTIL
DEGS_ECOLI/248-336 LIRDGRV..-IRGYIGIGGREIAPLhaqgg......gidqlqGIVVNEVSPD.GPAANAG--IQVNDLIISV..DN....kPAISAL.ETMDQVAEIRPGS-....-VIPVVVM
YNM3_YEAST/290-375 QWLLKPY..DECRRLGLTSERESEArakf.........peniGLLVAETVLR.EGPGYDK--IKEGDTLISI..NG.....ETISSFmQVDKIQDENVGK--....-EIQLVIQ
LIMK2_RAT/152-236 LISMPAT..-TECRRGFSVSVESASsn............yatTVQVKEVNRM.HISPNNRNAIHPGDRILEI..NG.....TPVRTL.RVEEVEDAINQTSQ....-TLQLLIE
LIMK2_HUMAN/152-236 LISMPAT..-TEGRRGFSVSVESACsn............yatTVQVKEVNRM.HISPNNRNAIHPGDRILEI..NG.....TPVRTL.RVEEVEDAISQTSQ....-TLQLLIE
LIMK2_CHICK/152-236 LISMPAA..-TDGKRGFSVSVEGGCss............yatGVQVKEVNRM.HISPDVRNAIHPADRILEI..NG.....APIRTL.QVEEVEDLIRKTSQ....-TLQLLIE
LIMK1_RAT/165-255 LVSIPAS..-AHGKRGLSVSIDPPHgppgc......gtehshTVRVQGVDPG.CMSPDVKNSIHIGDRILEI..NG.....TPIRNV.PLDEIDLLIQETSR....-LLQLTLE
LIMK1_MOUSE/165-255 LVSIPAS..-AHGKRGLSVSIDPPHgppgc......gtehshTVRVQGVDPG.CMSPDVKNSIHVGDRILEI..NG.....TPIRNV.PLDEIDLLIQETSR....-LLQLTLE
LIMK1_HUMAN/165-255 LVSIPAS..-SHGKRGLSVSIDPPHgppgc......gtehshTVRVQGVDPG.CMSPDVKNSIHVGDRILEI..NG.....TPIRNV.PLDEIDLLIQETSR....-LLQLTLE
GSPC_KLEPN/190-270 ELRAQPQ..NILHYLNISPVMVNDK................lSGYRLNPGKD.-PALFRQSGLRENDLAIAL..NG.....LDLRDK.EQARQVLAQLPELT....-EITLTVE
PSD9_YEAST/99-191 RSHVLL-..-NQHFDNMNVKSNQDArrnnddq...aiqytipFAFISEVVPG.SPSDKAD--IKVDDKLISI..GN.....VHAANH.SKLQNIQMVVMKNE...dRPLPVLLL