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PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
PF00587 phylogeny |
| ((((((((((((((((((((((SYS_RICPR/167-342,((SYS_STAAU/169-345,((SYS_HAEIN/169-349,SYS_BUCAP/168-347),SYS_COXBU/168-345)),SYS_BACSU/169-345)),(SYS_MYCPN/165-339,SYS_HELPJ/170-345)),SYS_SYNY3/177-352),(SYS_AQUAE/170-345,SYS_THEMA/171-347)),SYS_CHLPN/168-345),(((SYS_DEIRA/166-343,SYS_THET2/164-341),(SYS_MYCTU/165-340,SYS_STRCO/169-344)),SYS_HALMA/173-356)),((SYS_HUMAN/198-386,(SYS_ARATH/175-354,SYSC_SCHPO/175-354)),(SYS_ARCFU/188-363,(SYS_SULSO/191-366,SYS_AERPE/197-372)))),((O45887_CAEEL/176-353,Q9VF85_DROME/149-323),((O65395_ARATH/262-438,(SYS_TREPA/167-343,SYS_BORBU/167-342)),(YHH1_YEAST/187-367,Q9UTB2_SCHPO/191-375)))),((SYG_AERPE/38-324,((SYG_METTH/38-319,((SYG_METJA/38-324,SYG_PYRAB/40-320),SYG_ARCFU/35-308)),((SYG_HUMAN/153-453,(Q06817_YEAST/41-343,SYG_YEAST/49-383)),Q9VUK8_DROME/185-485))),((SYG_MYCTU/41-278,(SYG_BORBU/36-258,SYG_TREPA/33-255)),SYG_MYCPN/39-271))),(((((((SYPC_YEAST/52-225,SYPC_CANAL/55-225),O74765_SCHPO/50-224),O45869_CAEEL/45-223),SYP_CHLTR/45-221),Q9UFT1_HUMAN/27-202),((Q9WYY4_THEMA/45-219,O66690_AQUAE/45-219),((SYP_SYNY3/59-236,((SYP_HELPJ/45-219,(SYP_BACSU/45-219,(SYP_ZYMMO/45-219,SYP_RICPR/45-219))),SYP_ECOLI/45-219)),(SYP_TREPA/43-217,SYP_MYCTU/47-221)))),((Q9RUW4_DEIRA/57-235,(YHI0_YEAST/223-403,SYP_BORBU/40-218)),(O58734_PYRHO/40-219,(SYP_METTH/49-227,(SYPC_METJA/32-211,Q9UWX2_SULSO/42-221)))))),((SYT_METTH/221-384,(SYT_ARCFU/223-390,SYT_PYRAB/233-400)),(SYT1_AERPE/60-243,(SYT_THEMA/267-436,((SYT_AQUAE/270-441,SYT_HELPY/245-414),((((SYT_ARATH/342-511,((SYTM_SCHPO/73-251,(O94025_CANAL/58-241,SYTM_YEAST/64-247)),SYTC_YEAST/355-524)),SYT_HUMAN/336-505),(SYT_CHLTR/263-433,(((SYT_RICPR/268-438,SYT_TREPA/219-391),SYT_HAEIN/269-439),SYT2_BACSU/271-440))),((SYT_MYCPN/194-369,SYT1_BACSU/272-447),((SYT_MYCLE/306-490,SYT_DEIRA/275-449),SYT_SYNY3/224-404)))))))),(SYH_THEMA/15-186,(SYH_AQUAE/15-186,((SYH_PORPU/16-187,SYH_SYNY3/16-187),((SYH_STAAW/14-186,(((SYH_HAEIN/16-186,SYH_ECOLI/16-187),((SYH_CHLPN/24-193,SYH_CHLTR/24-193),(SYH_MYCLE/26-193,SYH_DEIRA/24-196))),SYH_BACSU/15-187)),(SYH_MYCPN/16-187,SYH_MYCGE/16-187)))))),SYH_ARCFU/15-179),SYH_METJA/17-183),SYH_PYRHO/14-179),O82413_ARATH/81-250),(SYH_TREPA/21-187,SYH_BORBU/16-189)),SYH_HELPJ/16-181),SYH_AERPE/21-188),(SYH_YEAST/67-233,O43011_SCHPO/75-242)),SYH_ORYSA/71-235),SYHH_HUMAN/69-235,SYH_HUMAN/68-234); |
| ((((((((((((((((((((((SYS_RICPR/167-342:0.36562,((SYS_STAAU/169-345:0.20776,((SYS_HAEIN/169-349:0.18958,SYS_BUCAP/168-347:0.22937):0.06807,SYS_COXBU/168-345:0.30502):0.11085):0.07310,SYS_BACSU/169-345:0.31945):0.07908):0.07184,(SYS_MYCPN/165-339:0.42121,SYS_HELPJ/170-345:0.35321):0.05604):0.08204,SYS_SYNY3/177-352:0.32303):0.03967,(SYS_AQUAE/170-345:0.17796,SYS_THEMA/171-347:0.26287):0.10149):0.09009,SYS_CHLPN/168-345:0.46461):0.15634,(((SYS_DEIRA/166-343:0.28253,SYS_THET2/164-341:0.29843):0.10564,(SYS_MYCTU/165-340:0.24041,SYS_STRCO/169-344:0.13689):0.14749):0.04805,SYS_HALMA/173-356:0.32712):0.13464):0.06582,((SYS_HUMAN/198-386:0.20662,(SYS_ARATH/175-354:0.19707,SYSC_SCHPO/175-354:0.28443):0.13147):0.20232,(SYS_ARCFU/188-363:0.22235,(SYS_SULSO/191-366:0.37424,SYS_AERPE/197-372:0.18652):0.10692):0.10902):0.06329):0.04870,((O45887_CAEEL/176-353:0.44024,Q9VF85_DROME/149-323:0.28143):0.15536,((O65395_ARATH/262-438:0.29781,(SYS_TREPA/167-343:0.37061,SYS_BORBU/167-342:0.26951):0.13498):0.08213,(YHH1_YEAST/187-367:0.40156,Q9UTB2_SCHPO/191-375:0.36942):0.15328):0.09117):0.20086):0.43701,((SYG_AERPE/38-324:0.36538,((SYG_METTH/38-319:0.25936,((SYG_METJA/38-324:0.31392,SYG_PYRAB/40-320:0.25794):0.06582,SYG_ARCFU/35-308:0.27040):0.07824):0.04992,((SYG_HUMAN/153-453:0.19983,(Q06817_YEAST/41-343:0.20022,SYG_YEAST/49-383:0.15383):0.15065):0.10797,Q9VUK8_DROME/185-485:0.18405):0.19685):0.10770):0.04155,((SYG_MYCTU/41-278:0.33102,(SYG_BORBU/36-258:0.31037,SYG_TREPA/33-255:0.23969):0.18981):0.06527,SYG_MYCPN/39-271:0.56784):0.11497):0.33402):0.08965,(((((((SYPC_YEAST/52-225:0.37706,SYPC_CANAL/55-225:0.28296):0.17831,O74765_SCHPO/50-224:0.33993):0.09255,O45869_CAEEL/45-223:0.46478):0.09071,SYP_CHLTR/45-221:0.37371):0.11731,Q9UFT1_HUMAN/27-202:0.38352):0.09186,((Q9WYY4_THEMA/45-219:0.25197,O66690_AQUAE/45-219:0.34759):0.07763,((SYP_SYNY3/59-236:0.31261,((SYP_HELPJ/45-219:0.42514,(SYP_BACSU/45-219:0.28809,(SYP_ZYMMO/45-219:0.32644,SYP_RICPR/45-219:0.27220):0.14631):0.05239):0.07748,SYP_ECOLI/45-219:0.25825):0.05772):0.06096,(SYP_TREPA/43-217:0.37793,SYP_MYCTU/47-221:0.34125):0.07541):0.08813):0.02542):0.39414,((Q9RUW4_DEIRA/57-235:0.32911,(YHI0_YEAST/223-403:0.33051,SYP_BORBU/40-218:0.28187):0.14976):0.19778,(O58734_PYRHO/40-219:0.26759,(SYP_METTH/49-227:0.24382,(SYPC_METJA/32-211:0.19397,Q9UWX2_SULSO/42-221:0.30138):0.08061):0.10719):0.19581):0.23820):0.09973):0.11006,((SYT_METTH/221-384:0.37142,(SYT_ARCFU/223-390:0.18262,SYT_PYRAB/233-400:0.21621):0.13959):0.31352,(SYT1_AERPE/60-243:0.42524,(SYT_THEMA/267-436:0.25364,((SYT_AQUAE/270-441:0.27043,SYT_HELPY/245-414:0.46546):0.06244,((((SYT_ARATH/342-511:0.23019,((SYTM_SCHPO/73-251:0.33314,(O94025_CANAL/58-241:0.19317,SYTM_YEAST/64-247:0.27230):0.07565):0.14107,SYTC_YEAST/355-524:0.14224):0.07518):0.12333,SYT_HUMAN/336-505:0.21536):0.13892,(SYT_CHLTR/263-433:0.36545,(((SYT_RICPR/268-438:0.29567,SYT_TREPA/219-391:0.29159):0.10149,SYT_HAEIN/269-439:0.28374):0.12855,SYT2_BACSU/271-440:0.33161):0.12987):0.08722):0.09278,((SYT_MYCPN/194-369:0.43554,SYT1_BACSU/272-447:0.28369):0.17799,((SYT_MYCLE/306-490:0.40174,SYT_DEIRA/275-449:0.29175):0.07374,SYT_SYNY3/224-404:0.33174):0.03824):0.08624):0.09883):0.06051):0.08886):0.19292):0.10284):0.38974,(SYH_THEMA/15-186:0.30258,(SYH_AQUAE/15-186:0.36220,((SYH_PORPU/16-187:0.31999,SYH_SYNY3/16-187:0.35068):0.09490,((SYH_STAAW/14-186:0.25129,(((SYH_HAEIN/16-186:0.24326,SYH_ECOLI/16-187:0.21699):0.18768,((SYH_CHLPN/24-193:0.20415,SYH_CHLTR/24-193:0.19365):0.31554,(SYH_MYCLE/26-193:0.26668,SYH_DEIRA/24-196:0.42167):0.23747):0.07428):0.08361,SYH_BACSU/15-187:0.23100):0.10317):0.06688,(SYH_MYCPN/16-187:0.31544,SYH_MYCGE/16-187:0.24769):0.42672):0.05644):0.12918):0.10154):0.17178):0.15630,SYH_ARCFU/15-179:0.31952):0.14139,SYH_METJA/17-183:0.24710):0.11929,SYH_PYRHO/14-179:0.29119):0.11179,O82413_ARATH/81-250:0.63803):0.13764,(SYH_TREPA/21-187:0.38758,SYH_BORBU/16-189:0.40365):0.08289):0.03815,SYH_HELPJ/16-181:0.40020):0.10365,SYH_AERPE/21-188:0.50572):0.22011,(SYH_YEAST/67-233:0.27187,O43011_SCHPO/75-242:0.19115):0.06578):0.04587,SYH_ORYSA/71-235:0.24208):0.21606,SYHH_HUMAN/69-235:0.18445,SYH_HUMAN/68-234:0.10944); |