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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00574 phylogeny
for amino acid alignment


 
(((((((((((((((CLPP_AQUAE/19-200,(CLPP1_MYXXA/11-192,CLPP_THEMA/21-202)),((((CLPP2_CHLPN/12-193,CLPP1_BORBU/14-197),(CLPP_HELPJ/12-193,CLPP_CAMJE/11-192)),CLPP_RALSO/34-215),((((CLPP_STAAW/12-193,(CLPP_STRSL/10-193,CLPP_LISIN/12-193)),(CLPP2_BACHD/13-194,Q8VQM6_BACTU/12-193)),CLPP1_BACHD/12-193),(CLPP_CLOAB/12-193,(CLPP_CLOPE/13-194,CLPP_THETN/15-196))))),(((((CLPP2_STRCO/28-210,(CLPP1_CORGL/24-204,CLPP2_MYCLE/27-207)),CLPP5_STRCO/18-201),CLPP4_STRCO/14-196),CLPP1_TREPA/17-198),(((CLPP_HAEIN/12-193,(CLPP1_PSEAE/28-209,(CLPP_YEREN/25-206,CLPP_BUCAP/16-197))),(CLPP_XYLFA/19-200,(CLPP_DEIRA/15-196,(((CLPP_AZOBR/20-201,(((CLPP1_AGRT5/16-197,CLPP1_RHILO/16-197),CLPP_CAUCR/20-201),(CLPP2_RHIME/20-201,CLPP_BRUME/20-201))),((CLPP_CAEEL/19-200,(Q9VKY3_DROME/38-219,CLPP_MOUSE/63-244)),Q9FN42_ARATH/41-222)),CLPP_RICPR/12-193)))),(CLPP_FUSNN/11-193,CLPP_NEIMA/16-199)))),(((CLPP1_ANASP/11-192,Q9S834_ARATH/107-288),(CLPP1_SYNP7/10-191,CLPP2_SYNY3/32-213)),CLPP_CHLTE/37-218)),(((CLPP1_STRCO/32-208,(CLPP2_CORGL/13-195,CLPP1_MYCTU/11-193)),((Q42886_LYCES/95-274,O97252_PLAF7/180-359),(Q9ST19_BRACM/82-261,(Q8LAN0_ARATH/74-253,Q9FRM4_ORYSA/73-254)))),((CLPPL_CYAPA/12-197,CLPP1_CHLTR/2-188),((((Q92CR8_LISIN/4-186,Q8UD57_AGRT5/23-198),CLPP2_PSEAE/13-193),CLPP_PARDE/13-195),(CLPP2_TREPA/15-193,CLPP2_BORBU/14-197))))),(CLPP3_SYNP7/13-197,CLPP3_SYNY3/13-197)),CLPP3_ANASP/13-196),((CLPP_CHLVU/13-196,((CLPP_MESVI/13-196,CLPP_NEPOL/13-196),(CLPP_OENHO/19-204,(CLPP_PINCO/13-197,((CLPP_WHEAT/13-197,CLPP_SPIOL/13-196),(CLPP_CHAGL/13-197,CLPP_PSINU/13-197)))))),(CLPP_CHLRE/310-482,CLPP_CHLEU/342-515))),Q98RU2_GUITH/45-228),Q9XJ36_ARATH/79-263),TEPA_BACHD/48-232),(Q8LTH1_9CAUD/11-173,(Q8P2G1_STRP3/13-175,Q9CFR9_LACLA/7-176))),Q9XJT4_BPD3/38-211),(Q9B0E1_9CAUD/16-186,Q8W605_9CAUD/17-189)),Q9EYD3_ECO57/6-171,Q8ZQG9_SALTY/47-225);
(((((((((((((((CLPP_AQUAE/19-200:0.16501,(CLPP1_MYXXA/11-192:0.19805,CLPP_THEMA/21-202:0.18203):0.01203):0.02513,((((CLPP2_CHLPN/12-193:0.36927,CLPP1_BORBU/14-197:0.31539):0.05684,(CLPP_HELPJ/12-193:0.14774,CLPP_CAMJE/11-192:0.09516):0.11145):0.03782,CLPP_RALSO/34-215:0.19816):0.03942,((((CLPP_STAAW/12-193:0.09544,(CLPP_STRSL/10-193:0.39613,CLPP_LISIN/12-193:0.10260):0.06358):0.04862,(CLPP2_BACHD/13-194:0.23676,Q8VQM6_BACTU/12-193:0.17977):0.08728):0.04159,CLPP1_BACHD/12-193:0.12320):0.06431,(CLPP_CLOAB/12-193:0.14764,(CLPP_CLOPE/13-194:0.11142,CLPP_THETN/15-196:0.19995):0.03503):0.04009):0.06724):0.03906):0.01795,(((((CLPP2_STRCO/28-210:0.18399,(CLPP1_CORGL/24-204:0.10764,CLPP2_MYCLE/27-207:0.15605):0.11551):0.05993,CLPP5_STRCO/18-201:0.45026):0.08191,CLPP4_STRCO/14-196:0.40152):0.17310,CLPP1_TREPA/17-198:0.29977):0.14440,(((CLPP_HAEIN/12-193:0.21971,(CLPP1_PSEAE/28-209:0.14553,(CLPP_YEREN/25-206:0.08491,CLPP_BUCAP/16-197:0.25465):0.05519):0.04513):0.03916,(CLPP_XYLFA/19-200:0.15524,(CLPP_DEIRA/15-196:0.38039,(((CLPP_AZOBR/20-201:0.17633,(((CLPP1_AGRT5/16-197:0.28226,CLPP1_RHILO/16-197:0.11522):0.23201,CLPP_CAUCR/20-201:0.01417):0.08129,(CLPP2_RHIME/20-201:0.10613,CLPP_BRUME/20-201:0.14331):0.05494):0.11844):0.04269,((CLPP_CAEEL/19-200:0.32369,(Q9VKY3_DROME/38-219:0.17894,CLPP_MOUSE/63-244:0.18439):0.05819):0.07818,Q9FN42_ARATH/41-222:0.32486):0.03618):0.03058,CLPP_RICPR/12-193:0.23586):0.03900):0.05487):0.02366):0.05050,(CLPP_FUSNN/11-193:0.25696,CLPP_NEIMA/16-199:0.17111):0.06831):0.03350):0.02072):0.03383,(((CLPP1_ANASP/11-192:0.08554,Q9S834_ARATH/107-288:0.35205):0.03626,(CLPP1_SYNP7/10-191:0.15216,CLPP2_SYNY3/32-213:0.16734):0.01238):0.05227,CLPP_CHLTE/37-218:0.26468):0.05076):0.08631,(((CLPP1_STRCO/32-208:0.16814,(CLPP2_CORGL/13-195:0.08899,CLPP1_MYCTU/11-193:0.24492):0.20325):0.20810,((Q42886_LYCES/95-274:0.60814,O97252_PLAF7/180-359:0.52601):0.09726,(Q9ST19_BRACM/82-261:0.39080,(Q8LAN0_ARATH/74-253:0.09969,Q9FRM4_ORYSA/73-254:0.15621):0.29677):0.09301):0.11927):0.04635,((CLPPL_CYAPA/12-197:0.66565,CLPP1_CHLTR/2-188:0.57943):0.19956,((((Q92CR8_LISIN/4-186:0.36387,Q8UD57_AGRT5/23-198:0.28744):0.05672,CLPP2_PSEAE/13-193:0.33600):0.10584,CLPP_PARDE/13-195:0.43601):0.17122,(CLPP2_TREPA/15-193:0.35390,CLPP2_BORBU/14-197:0.44914):0.22084):0.35244):0.09086):0.04426):0.10436,(CLPP3_SYNP7/13-197:0.11316,CLPP3_SYNY3/13-197:0.13629):0.05606):0.08201,CLPP3_ANASP/13-196:0.13005):0.08448,((CLPP_CHLVU/13-196:0.20911,((CLPP_MESVI/13-196:0.35331,CLPP_NEPOL/13-196:0.35867):0.10226,(CLPP_OENHO/19-204:0.61405,(CLPP_PINCO/13-197:0.31030,((CLPP_WHEAT/13-197:0.32292,CLPP_SPIOL/13-196:0.07456):0.07967,(CLPP_CHAGL/13-197:0.16683,CLPP_PSINU/13-197:0.11908):0.08880):0.07288):0.07777):0.22839):0.04831):0.04007,(CLPP_CHLRE/310-482:0.19357,CLPP_CHLEU/342-515:0.59446):0.77651):0.16092):0.06201,Q98RU2_GUITH/45-228:0.15746):0.10750,Q9XJ36_ARATH/79-263:0.53757):0.30026,TEPA_BACHD/48-232:1.92982):0.39656,(Q8LTH1_9CAUD/11-173:0.49542,(Q8P2G1_STRP3/13-175:0.69229,Q9CFR9_LACLA/7-176:0.66899):0.06936):0.18180):0.08658,Q9XJT4_BPD3/38-211:0.56864):0.19548,(Q9B0E1_9CAUD/16-186:0.53782,Q8W605_9CAUD/17-189:0.61287):0.09668):0.28530,Q9EYD3_ECO57/6-171:0.20253,Q8ZQG9_SALTY/47-225:0.39961);