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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00564 phylogeny
for amino acid alignment


 
((((((((REF2P_DROME/3-88,SCD1_SCHPO/774-871),(Q9GRV1_CAEEL/254-335,Q9DGF6_XENLA/10-91)),((((KPCZ_HUMAN/15-98,(KPCI_HUMAN/16-97,Q9GSZ3_DROME/30-111)),PKC3_CAEEL/12-95),M172_HUMAN/4-85),(((Q9D222_MOUSE/18-97,O96611_DICDI/15-101),((((Q9FKL3_ARATH/38-123,Q9STG4_ARATH/89-178),(O64768_ARATH/191-277,((O23015_ARATH/119-206,Q9LRY7_ARATH/190-277),Q9SA26_ARATH/179-266))),(((Q9M0Y0_ARATH/42-130,(((Q9LJQ7_ARATH/78-168,Q9ZU48_ARATH/89-181),Q9FRH9_ARATH/25-110),Q9LF06_ARATH/45-138)),Q9FGF3_ARATH/59-153),(Q9LTX8_ARATH/24-105,((Q9FML0_ARATH/29-112,Q9STK4_ARATH/28-111),(Q9LRV7_ARATH/43-132,Q9S843_ARATH/22-106))))),(Q9FI74_ARATH/19-100,Q9M9L2_ARATH/19-102))),((CDC24_YEAST/761-854,Q9HF59_ASHGO/680-760),Q9SB64_ARATH/7-92)))),(((M3K2_HUMAN/43-122,M3K3_HUMAN/44-123),SCD2_SCHPO/459-532),((O60533_HUMAN/71-151,(NCF2_HUMAN/351-429,O70145_MOUSE/350-428)),(PAR6_CAEEL/14-96,(O97111_DROME/19-101,((PAR6B_HUMAN/16-96,PAR6G_HUMAN/18-98),PAR6A_HUMAN/15-95)))))),(((((Q9FMV3_ARATH/404-489,Q9LUF7_ARATH/413-498),(Q9LF97_ARATH/416-502,Q9SJQ5_ARATH/408-489)),YE45_SCHPO/574-653),((O22864_ARATH/847-929,((O22987_ARATH/863-945,Q9LI18_ORYSA/761-840),Q9SGW2_ARATH/747-829)),((Q9SVF1_ARATH/673-759,(Q9S7B1_LOTJA/780-863,O65500_ARATH/867-955)),Q9LE38_ARATH/744-827))),BEM1_YEAST/478-551)),(P92988_ARATH/290-382,O49385_ARATH/317-396)),(NCF4_HUMAN/237-329,NCF4_MOUSE/237-329)),Q99JM8_MOUSE/20-102,Q13502_HUMAN/1-82);
((((((((REF2P_DROME/3-88:2.31202,SCD1_SCHPO/774-871:0.53815):0.34809,(Q9GRV1_CAEEL/254-335:0.87864,Q9DGF6_XENLA/10-91:0.65790):0.23755):0.13905,((((KPCZ_HUMAN/15-98:0.27013,(KPCI_HUMAN/16-97:0.18370,Q9GSZ3_DROME/30-111:0.44995):0.14976):0.32624,PKC3_CAEEL/12-95:0.70453):0.41355,M172_HUMAN/4-85:0.82170):0.27948,(((Q9D222_MOUSE/18-97:1.11475,O96611_DICDI/15-101:1.09080):0.18301,((((Q9FKL3_ARATH/38-123:0.21986,Q9STG4_ARATH/89-178:0.34918):0.05682,(O64768_ARATH/191-277:0.20149,((O23015_ARATH/119-206:0.26945,Q9LRY7_ARATH/190-277:0.28279):0.11539,Q9SA26_ARATH/179-266:0.19833):0.09781):0.21254):0.03898,(((Q9M0Y0_ARATH/42-130:0.30067,(((Q9LJQ7_ARATH/78-168:0.21925,Q9ZU48_ARATH/89-181:0.10883):0.04741,Q9FRH9_ARATH/25-110:0.55147):0.10358,Q9LF06_ARATH/45-138:0.62647):0.10255):0.13969,Q9FGF3_ARATH/59-153:0.33189):0.18141,(Q9LTX8_ARATH/24-105:0.44949,((Q9FML0_ARATH/29-112:0.08446,Q9STK4_ARATH/28-111:0.17748):0.33853,(Q9LRV7_ARATH/43-132:0.26588,Q9S843_ARATH/22-106:0.22925):0.22275):0.12983):0.02850):0.06733):0.18120,(Q9FI74_ARATH/19-100:0.44705,Q9M9L2_ARATH/19-102:0.30380):0.88167):0.96421):0.15230,((CDC24_YEAST/761-854:0.41427,Q9HF59_ASHGO/680-760:0.39638):0.74095,Q9SB64_ARATH/7-92:0.83788):0.25232):0.05348):0.19147):0.09660,(((M3K2_HUMAN/43-122:0.15109,M3K3_HUMAN/44-123:0.34866):0.83813,SCD2_SCHPO/459-532:0.93033):0.51305,((O60533_HUMAN/71-151:1.17063,(NCF2_HUMAN/351-429:0.00000,O70145_MOUSE/350-428:0.28869):1.27986):0.29081,(PAR6_CAEEL/14-96:0.28089,(O97111_DROME/19-101:0.42338,((PAR6B_HUMAN/16-96:0.07193,PAR6G_HUMAN/18-98:0.23795):0.28774,PAR6A_HUMAN/15-95:0.33092):0.32863):0.17063):0.53750):0.17029):0.13363):0.14956,(((((Q9FMV3_ARATH/404-489:0.18668,Q9LUF7_ARATH/413-498:0.16345):0.25669,(Q9LF97_ARATH/416-502:0.12545,Q9SJQ5_ARATH/408-489:0.23257):0.20151):0.60159,YE45_SCHPO/574-653:0.64515):0.41397,((O22864_ARATH/847-929:0.66699,((O22987_ARATH/863-945:0.10743,Q9LI18_ORYSA/761-840:0.29831):0.10728,Q9SGW2_ARATH/747-829:0.38646):0.04617):0.02774,((Q9SVF1_ARATH/673-759:0.34612,(Q9S7B1_LOTJA/780-863:0.38527,O65500_ARATH/867-955:0.56019):0.11616):0.10840,Q9LE38_ARATH/744-827:0.57945):0.31060):0.44807):0.11232,BEM1_YEAST/478-551:1.09923):0.14252):0.27702,(P92988_ARATH/290-382:0.44090,O49385_ARATH/317-396:0.39832):0.36554):0.24697,(NCF4_HUMAN/237-329:0.09344,NCF4_MOUSE/237-329:0.05528):1.15764):1.03651,Q99JM8_MOUSE/20-102:0.02433,Q13502_HUMAN/1-82:0.04426);