EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00559 - Vif)
Retroviral Vif (Viral infectivity) protein
(Pfam reference: accession no. PF00559)
(Interpro reference: accession no. IPR000475)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
10 sequences @ 209 aa
(ave. pairwise identity: 0.42)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 4.48)
nucleotides
(available for above)
8 sequences @ 627 bp
(ave. pairwise identity: 0.53)
New Hampshire format
(total tree length: 2.61)
amino acids, restricted set
(corresp. to available nt seqs)
8 sequences @ 209 aa
(ave. pairwise identity: 0.42)
New Hampshire format
(total tree length: 3.71)