EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00552 - Integrase)
Integrase DNA binding domain
(Pfam reference: accession no. PF00552)
(Interpro reference: accession no. IPR001037)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
39 sequences @ 62 aa
(ave. pairwise identity: 0.30)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 19.56)
nucleotides
(available for above)
31 sequences @ 186 bp
(ave. pairwise identity: 0.42)
New Hampshire format
(total tree length: 12.31)
amino acids, restricted set
(corresp. to available nt seqs)
31 sequences @ 62 aa
(ave. pairwise identity: 0.31)
New Hampshire format
(total tree length: 17.60)