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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00533 phylogeny
for restricted amino acid alignment


 
(O49549_ARATH/1230-1322,((BRCA1_HUMAN/1756-1842,Q9Z0W6_MOUSE/94-170),((((Q22590_CAEEL/206-280,(DNL3_MOUSE/939-1006,XRCC1_HUMAN/538-616)),(((Q9Z0W6_MOUSE/8-80,YBM5_SCHPO/14-91),(Q94046_CAEEL/930-1016,RAP1_YEAST/121-195)),(TDT_ONCMY/24-108,((TDT_XENLA/27-111,((TDT_MONDO/27-111,TDT_HUMAN/27-111),TDT_CHICK/27-111)),TDT_AMBME/27-111)))),(((PARP4_HUMAN/1-81,REV1_YEAST/161-236),((DNL4_YEAST/681-767,DNL4_HUMAN/587-663),(((((((((YBM5_SCHPO/216-293,YHV4_YEAST/261-352),YEAE_SCHPO/381-469),RAD4_SCHPO/392-473),Q20129_CAEEL/724-794),RAD4_SCHPO/298-371),Q20129_CAEEL/496-574),(Q09615_CAEEL/251-326,YHV4_YEAST/2-103)),(Q92547_HUMAN/576-648,(Q20129_CAEEL/632-704,DPB11_YEAST/322-405))),((DNL4_HUMAN/741-831,DNL4_YEAST/836-928),DNLI_CANAL/673-756)))),((Q92547_HUMAN/382-459,(YBM5_SCHPO/767-859,((O44844_CAEEL/154-256,YPT4_CAEEL/1049-1141),O16568_CAEEL/1044-1144))),((YHV4_YEAST/117-213,YBM5_SCHPO/105-183),(((((Q9Z0W6_MOUSE/588-668,Q94046_CAEEL/514-600),(RHP9_SCHPO/535-640,RAD9_YEAST/994-1109)),((((Q9ZWC2_ARATH/495-577,O49549_ARATH/1115-1196),BRCA1_HUMAN/1642-1723),((YEAE_SCHPO/280-351,(Q9ZR18_ARATH/553-629,YHV4_YEAST/827-910)),(Q93161_CAEEL/972-1054,((O76369_CAEEL/856-950,Q18105_CAEEL/697-783),(O16229_CAEEL/378-460,YPT4_CAEEL/930-1012))))),(Q92547_HUMAN/1288-1366,O04251_ARATH/1053-1132))),(Q92547_HUMAN/129-204,Q20129_CAEEL/173-249)),((((((((DNLJ_HELPY/577-652,(DNLJ_THETH/589-664,DNLJ_AQUAE/619-696)),(((DNLJ_CHLTR/581-657,(((DNLJ_HAEIN/601-677,DNLJ_ECOLI/593-669),(DNLJ_BACST/589-665,DNLJ_BACSU/590-666)),(DNLJ_RICPR/610-686,DNLJ_ZYMMO/645-721))),((((Q61944_MOUSE/341-418,(RFC1_DROME/232-309,((P78622_EMENI/323-400,RFC1_YEAST/153-230),RFC1_SCHPO/236-313))),(DNLJ_STRCO/643-719,DNLJ_MYCLE/607-683)),DNLJ_RHOMR/633-709),DNLJ_CHLPN/583-659)),(DNLJ_SYNY3/591-667,Q57489_BACNO/36-112))),DNLJ_BORBU/583-659),O96271_PLAF7/208-298),(DNLJ_TREPA/654-729,DNLJ_TREPA/562-642)),(((Q9ZP54_ARATH/394-471,O24570_MAIZE/374-452),(PARP1_CHICK/382-460,PARP1_MOUSE/384-462)),(CHS5_SCHPO/167-243,(CHS5_YEAST/166-249,CHS5_CANAL/164-246)))),((XRCC1_MOUSE/315-390,Q92547_HUMAN/928-1006),RAD4_SCHPO/2-79)),(((Q94046_CAEEL/620-694,YHV4_YEAST/370-453),(((Q92547_HUMAN/223-299,ECT2_MOUSE/91-166),RAD4_SCHPO/97-172),(Q92547_HUMAN/669-753,YBM5_SCHPO/311-386))),(FCP1_YEAST/499-580,DPB11_YEAST/111-207)))))))),((((PESC_BRARE/323-403,PESC_HUMAN/322-402),PESC_SCHPO/348-428),PESC_YEAST/355-436),O97209_LEIMA/317-390))),Q9ZWC2_ARATH/611-717);
(O49549_ARATH/1230-1322:0.56907,((BRCA1_HUMAN/1756-1842:1.13155,Q9Z0W6_MOUSE/94-170:0.76094):0.20350,((((Q22590_CAEEL/206-280:1.20206,(DNL3_MOUSE/939-1006:1.02331,XRCC1_HUMAN/538-616:0.89813):0.13499):0.32209,(((Q9Z0W6_MOUSE/8-80:1.13884,YBM5_SCHPO/14-91:1.03245):0.41505,(Q94046_CAEEL/930-1016:1.26623,RAP1_YEAST/121-195:1.03509):0.16862):0.00485,(TDT_ONCMY/24-108:0.28015,((TDT_XENLA/27-111:0.18701,((TDT_MONDO/27-111:0.20148,TDT_HUMAN/27-111:0.14857):0.09495,TDT_CHICK/27-111:0.21932):0.14006):0.06381,TDT_AMBME/27-111:0.24008):0.19375):1.37659):0.18781):0.33510,(((PARP4_HUMAN/1-81:0.94227,REV1_YEAST/161-236:0.78892):0.17932,((DNL4_YEAST/681-767:1.00538,DNL4_HUMAN/587-663:1.13427):0.27415,(((((((((YBM5_SCHPO/216-293:0.95245,YHV4_YEAST/261-352:1.14490):0.54157,YEAE_SCHPO/381-469:1.46666):0.14876,RAD4_SCHPO/392-473:1.39377):0.15172,Q20129_CAEEL/724-794:1.21665):0.26915,RAD4_SCHPO/298-371:1.10570):0.43716,Q20129_CAEEL/496-574:1.20799):0.28404,(Q09615_CAEEL/251-326:1.01573,YHV4_YEAST/2-103:1.79693):0.79547):0.00000,(Q92547_HUMAN/576-648:1.27566,(Q20129_CAEEL/632-704:1.70796,DPB11_YEAST/322-405:0.75697):0.40896):0.47733):0.00000,((DNL4_HUMAN/741-831:0.79791,DNL4_YEAST/836-928:1.57870):0.60382,DNLI_CANAL/673-756:0.99755):0.30125):0.02111):0.18837):0.24574,((Q92547_HUMAN/382-459:1.12437,(YBM5_SCHPO/767-859:1.45750,((O44844_CAEEL/154-256:0.86486,YPT4_CAEEL/1049-1141:1.85445):0.57834,O16568_CAEEL/1044-1144:1.53340):0.00000):0.31040):0.36702,((YHV4_YEAST/117-213:1.06405,YBM5_SCHPO/105-183:1.24113):0.58490,(((((Q9Z0W6_MOUSE/588-668:0.81353,Q94046_CAEEL/514-600:1.10373):0.44426,(RHP9_SCHPO/535-640:0.83196,RAD9_YEAST/994-1109:1.11769):0.19923):0.35479,((((Q9ZWC2_ARATH/495-577:0.50836,O49549_ARATH/1115-1196:0.43627):0.40653,BRCA1_HUMAN/1642-1723:1.09786):0.23455,((YEAE_SCHPO/280-351:0.93317,(Q9ZR18_ARATH/553-629:0.76068,YHV4_YEAST/827-910:2.70925):0.54933):0.17890,(Q93161_CAEEL/972-1054:0.00000,((O76369_CAEEL/856-950:0.71500,Q18105_CAEEL/697-783:0.64296):0.29839,(O16229_CAEEL/378-460:0.17178,YPT4_CAEEL/930-1012:0.21402):0.10187):0.10544):1.16517):0.10239):0.34087,(Q92547_HUMAN/1288-1366:0.78973,O04251_ARATH/1053-1132:0.95316):0.27022):0.14432):0.06875,(Q92547_HUMAN/129-204:0.60516,Q20129_CAEEL/173-249:0.82228):0.44012):0.29955,((((((((DNLJ_HELPY/577-652:0.40845,(DNLJ_THETH/589-664:0.36783,DNLJ_AQUAE/619-696:0.49110):0.07753):0.10722,(((DNLJ_CHLTR/581-657:0.43649,(((DNLJ_HAEIN/601-677:0.33682,DNLJ_ECOLI/593-669:0.12424):0.03651,(DNLJ_BACST/589-665:0.22445,DNLJ_BACSU/590-666:0.19848):0.14007):0.09376,(DNLJ_RICPR/610-686:0.34906,DNLJ_ZYMMO/645-721:0.24572):0.21602):0.09765):0.12517,((((Q61944_MOUSE/341-418:0.21920,(RFC1_DROME/232-309:0.28435,((P78622_EMENI/323-400:0.22815,RFC1_YEAST/153-230:0.38371):0.13821,RFC1_SCHPO/236-313:0.33936):0.24353):0.17188):0.28006,(DNLJ_STRCO/643-719:0.14951,DNLJ_MYCLE/607-683:0.34647):0.25640):0.10591,DNLJ_RHOMR/633-709:0.27672):0.11601,DNLJ_CHLPN/583-659:0.50263):0.08352):0.06001,(DNLJ_SYNY3/591-667:0.22622,Q57489_BACNO/36-112:0.67700):0.14130):0.00770):0.18316,DNLJ_BORBU/583-659:0.96835):0.01675,O96271_PLAF7/208-298:0.78890):0.04416,(DNLJ_TREPA/654-729:0.53283,DNLJ_TREPA/562-642:0.56435):0.31194):0.57959,(((Q9ZP54_ARATH/394-471:0.33524,O24570_MAIZE/374-452:0.70403):0.36537,(PARP1_CHICK/382-460:0.24480,PARP1_MOUSE/384-462:0.04715):0.94615):0.61987,(CHS5_SCHPO/167-243:0.76187,(CHS5_YEAST/166-249:0.56507,CHS5_CANAL/164-246:0.19383):0.38994):0.78839):0.00000):0.09010,((XRCC1_MOUSE/315-390:0.53793,Q92547_HUMAN/928-1006:1.02465):0.00111,RAD4_SCHPO/2-79:0.85674):0.33876):0.29346,(((Q94046_CAEEL/620-694:0.83951,YHV4_YEAST/370-453:1.05057):0.25843,(((Q92547_HUMAN/223-299:0.57739,ECT2_MOUSE/91-166:1.04924):0.21287,RAD4_SCHPO/97-172:0.76000):0.20429,(Q92547_HUMAN/669-753:1.03558,YBM5_SCHPO/311-386:0.85646):0.21551):0.19442):0.15528,(FCP1_YEAST/499-580:0.79292,DPB11_YEAST/111-207:1.18575):0.50774):0.00000):0.16451):0.00000):0.15058):0.04833):0.22940):0.00000,((((PESC_BRARE/323-403:0.12175,PESC_HUMAN/322-402:0.20771):0.23756,PESC_SCHPO/348-428:0.32300):0.18072,PESC_YEAST/355-436:0.53005):0.32256,O97209_LEIMA/317-390:0.38036):0.94141):0.00000):0.72178,Q9ZWC2_ARATH/611-717:0.40918);