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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00533 phylogeny
for nucleotide alignment


 
((((((((((((Q94046_CAEEL/514-600,((O49549_ARATH/1230-1322,Q9ZWC2_ARATH/611-717),((XRCC1_HUMAN/538-616,DNL3_MOUSE/939-1006),((((PESC_YEAST/355-436,PESC_SCHPO/348-428),(PESC_HUMAN/322-402,PESC_BRARE/323-403)),O97209_LEIMA/317-390),BRCA1_HUMAN/1756-1842)))),((YHV4_YEAST/2-103,YHV4_YEAST/261-352),(((((O16568_CAEEL/1044-1144,(Q92547_HUMAN/1288-1366,Q92547_HUMAN/576-648)),DNL4_HUMAN/587-663),YHV4_YEAST/827-910),DNLI_CANAL/673-756),DNL4_YEAST/681-767))),(((Q20129_CAEEL/173-249,Q92547_HUMAN/129-204),(((((YPT4_CAEEL/930-1012,O16229_CAEEL/378-460),Q93161_CAEEL/972-1054),(Q18105_CAEEL/697-783,O76369_CAEEL/856-950)),(BRCA1_HUMAN/1642-1723,(O49549_ARATH/1115-1196,Q9ZWC2_ARATH/495-577))),((((TDT_XENLA/27-111,(TDT_CHICK/27-111,(TDT_MONDO/27-111,TDT_HUMAN/27-111))),TDT_AMBME/27-111),TDT_ONCMY/24-108),Q9Z0W6_MOUSE/8-80))),RAD9_YEAST/994-1109)),(((YBM5_SCHPO/311-386,(YEAE_SCHPO/381-469,YBM5_SCHPO/216-293)),((YBM5_SCHPO/767-859,DNL4_YEAST/836-928),(RAD4_SCHPO/392-473,Q92547_HUMAN/669-753))),((CHS5_CANAL/164-246,CHS5_YEAST/166-249),CHS5_SCHPO/167-243))),((((YPT4_CAEEL/1049-1141,Q9Z0W6_MOUSE/588-668),O44844_CAEEL/154-256),Q94046_CAEEL/930-1016),(YBM5_SCHPO/14-91,((PARP4_HUMAN/1-81,((REV1_YEAST/161-236,Q09615_CAEEL/251-326),DNL4_HUMAN/741-831)),((Q20129_CAEEL/496-574,RAD4_SCHPO/298-371),((Q20129_CAEEL/724-794,RHP9_SCHPO/535-640),(DPB11_YEAST/322-405,Q20129_CAEEL/632-704))))))),((YEAE_SCHPO/280-351,Q9ZR18_ARATH/553-629),RAP1_YEAST/121-195)),((((FCP1_YEAST/499-580,(YBM5_SCHPO/105-183,YHV4_YEAST/117-213)),RAD4_SCHPO/2-79),RAD4_SCHPO/97-172),DPB11_YEAST/111-207)),((((Q92547_HUMAN/928-1006,XRCC1_MOUSE/315-390),Q9Z0W6_MOUSE/94-170),Q92547_HUMAN/223-299),(O04251_ARATH/1053-1132,(Q92547_HUMAN/382-459,((Q22590_CAEEL/206-280,ECT2_MOUSE/91-166),YHV4_YEAST/370-453))))),Q94046_CAEEL/620-694),(DNLJ_BORBU/583-659,(O96271_PLAF7/208-298,(((((DNLJ_HELPY/577-652,((DNLJ_CHLPN/583-659,((Q61944_MOUSE/341-418,(RFC1_DROME/232-309,(RFC1_SCHPO/236-313,(RFC1_YEAST/153-230,P78622_EMENI/323-400)))),(((DNLJ_RHOMR/633-709,DNLJ_SYNY3/591-667),DNLJ_THETH/589-664),(DNLJ_MYCLE/607-683,DNLJ_STRCO/643-719)))),((DNLJ_TREPA/562-642,DNLJ_TREPA/654-729),DNLJ_AQUAE/619-696))),(DNLJ_CHLTR/581-657,Q57489_BACNO/36-112)),((DNLJ_BACSU/590-666,DNLJ_BACST/589-665),DNLJ_ECOLI/593-669)),DNLJ_HAEIN/601-677),(DNLJ_ZYMMO/645-721,DNLJ_RICPR/610-686))))),(O24570_MAIZE/374-452,Q9ZP54_ARATH/394-471)),PARP1_MOUSE/384-462,PARP1_CHICK/382-460);
((((((((((((Q94046_CAEEL/514-600:0.75496,((O49549_ARATH/1230-1322:0.54659,Q9ZWC2_ARATH/611-717:0.22454):0.22198,((XRCC1_HUMAN/538-616:0.56281,DNL3_MOUSE/939-1006:0.55667):0.20774,((((PESC_YEAST/355-436:0.31148,PESC_SCHPO/348-428:0.36588):0.25253,(PESC_HUMAN/322-402:0.14528,PESC_BRARE/323-403:0.24174):0.12695):0.15128,O97209_LEIMA/317-390:0.43368):0.17008,BRCA1_HUMAN/1756-1842:0.68375):0.12022):0.11801):0.32617):0.14605,((YHV4_YEAST/2-103:0.98106,YHV4_YEAST/261-352:0.82966):0.08673,(((((O16568_CAEEL/1044-1144:0.62041,(Q92547_HUMAN/1288-1366:0.66526,Q92547_HUMAN/576-648:0.61740):0.20502):0.16709,DNL4_HUMAN/587-663:0.43469):0.14627,YHV4_YEAST/827-910:1.06813):0.05150,DNLI_CANAL/673-756:0.57699):0.08531,DNL4_YEAST/681-767:0.65497):0.06766):0.07947):0.00000,(((Q20129_CAEEL/173-249:0.57469,Q92547_HUMAN/129-204:0.40992):0.16331,(((((YPT4_CAEEL/930-1012:0.23070,O16229_CAEEL/378-460:0.10223):0.07152,Q93161_CAEEL/972-1054:0.20739):0.13970,(Q18105_CAEEL/697-783:0.34887,O76369_CAEEL/856-950:0.48829):0.12864):0.43739,(BRCA1_HUMAN/1642-1723:0.63935,(O49549_ARATH/1115-1196:0.33736,Q9ZWC2_ARATH/495-577:0.34219):0.25398):0.07471):0.17550,((((TDT_XENLA/27-111:0.21257,(TDT_CHICK/27-111:0.20004,(TDT_MONDO/27-111:0.17716,TDT_HUMAN/27-111:0.15098):0.09981):0.03807):0.09020,TDT_AMBME/27-111:0.19388):0.13624,TDT_ONCMY/24-108:0.27183):0.33226,Q9Z0W6_MOUSE/8-80:0.82184):0.37604):0.12471):0.06807,RAD9_YEAST/994-1109:0.93147):0.06998):0.10866,(((YBM5_SCHPO/311-386:0.48419,(YEAE_SCHPO/381-469:0.65247,YBM5_SCHPO/216-293:0.41302):0.34365):0.07069,((YBM5_SCHPO/767-859:0.62651,DNL4_YEAST/836-928:0.93148):0.17145,(RAD4_SCHPO/392-473:0.73697,Q92547_HUMAN/669-753:0.40204):0.13032):0.10827):0.09560,((CHS5_CANAL/164-246:0.20146,CHS5_YEAST/166-249:0.46685):0.29781,CHS5_SCHPO/167-243:0.46447):0.30677):0.15057):0.06980,((((YPT4_CAEEL/1049-1141:0.38475,Q9Z0W6_MOUSE/588-668:0.88042):0.29151,O44844_CAEEL/154-256:0.60742):0.21122,Q94046_CAEEL/930-1016:0.63494):0.19387,(YBM5_SCHPO/14-91:0.72738,((PARP4_HUMAN/1-81:0.67609,((REV1_YEAST/161-236:0.40106,Q09615_CAEEL/251-326:0.76241):0.08873,DNL4_HUMAN/741-831:0.68167):0.13191):0.10167,((Q20129_CAEEL/496-574:0.58850,RAD4_SCHPO/298-371:0.51760):0.26131,((Q20129_CAEEL/724-794:0.52403,RHP9_SCHPO/535-640:0.68583):0.15651,(DPB11_YEAST/322-405:0.55648,Q20129_CAEEL/632-704:0.73134):0.11491):0.03670):0.17350):0.01709):0.06604):0.15386):0.02332,((YEAE_SCHPO/280-351:0.48592,Q9ZR18_ARATH/553-629:0.72912):0.23259,RAP1_YEAST/121-195:0.69774):0.30062):0.06412,((((FCP1_YEAST/499-580:0.51059,(YBM5_SCHPO/105-183:0.55749,YHV4_YEAST/117-213:0.63652):0.15595):0.11085,RAD4_SCHPO/2-79:0.46078):0.15147,RAD4_SCHPO/97-172:0.55152):0.14089,DPB11_YEAST/111-207:0.60180):0.08326):0.00000,((((Q92547_HUMAN/928-1006:0.57361,XRCC1_MOUSE/315-390:0.57495):0.15906,Q9Z0W6_MOUSE/94-170:0.51841):0.08579,Q92547_HUMAN/223-299:0.36972):0.31231,(O04251_ARATH/1053-1132:0.76171,(Q92547_HUMAN/382-459:0.63983,((Q22590_CAEEL/206-280:0.70125,ECT2_MOUSE/91-166:0.39723):0.07882,YHV4_YEAST/370-453:0.73972):0.10951):0.07886):0.06701):0.09021):0.16270,Q94046_CAEEL/620-694:0.57280):0.15852,(DNLJ_BORBU/583-659:0.55708,(O96271_PLAF7/208-298:0.55330,(((((DNLJ_HELPY/577-652:0.43049,((DNLJ_CHLPN/583-659:0.44370,((Q61944_MOUSE/341-418:0.26500,(RFC1_DROME/232-309:0.26966,(RFC1_SCHPO/236-313:0.36378,(RFC1_YEAST/153-230:0.42141,P78622_EMENI/323-400:0.19682):0.08617):0.16069):0.08786):0.15950,(((DNLJ_RHOMR/633-709:0.20635,DNLJ_SYNY3/591-667:0.45070):0.14383,DNLJ_THETH/589-664:0.30551):0.06599,(DNLJ_MYCLE/607-683:0.27767,DNLJ_STRCO/643-719:0.22141):0.14010):0.08293):0.15204):0.06545,((DNLJ_TREPA/562-642:0.51157,DNLJ_TREPA/654-729:0.27016):0.40567,DNLJ_AQUAE/619-696:0.23523):0.12634):0.15137):0.06715,(DNLJ_CHLTR/581-657:0.38177,Q57489_BACNO/36-112:0.51305):0.09717):0.09169,((DNLJ_BACSU/590-666:0.21774,DNLJ_BACST/589-665:0.25389):0.13931,DNLJ_ECOLI/593-669:0.26273):0.07399):0.07728,DNLJ_HAEIN/601-677:0.27767):0.10461,(DNLJ_ZYMMO/645-721:0.34711,DNLJ_RICPR/610-686:0.21539):0.09393):0.12128):0.07179):0.13166):0.12715,(O24570_MAIZE/374-452:0.32591,Q9ZP54_ARATH/394-471:0.37734):0.22441):0.71185,PARP1_MOUSE/384-462:0.07443,PARP1_CHICK/382-460:0.22483);