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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00533 phylogeny
for amino acid alignment


 
(((((((((((((((((YHV4_YEAST/2-103,YHV4_YEAST/827-910),(Q9Z0W6_MOUSE/8-80,Q94046_CAEEL/930-1016)),Q20129_CAEEL/496-574),(Q92547_HUMAN/576-648,(DNL4_HUMAN/587-663,Q20129_CAEEL/632-704))),DNLI_CANAL/673-756),((O16568_CAEEL/1044-1144,(O44844_CAEEL/154-256,YBM5_SCHPO/767-859)),((YEAE_SCHPO/381-469,(YHV4_YEAST/261-352,YBM5_SCHPO/216-293)),((O76369_CAEEL/856-950,(Q18105_CAEEL/697-783,(Q18104_CAEEL/407-489,(YPT4_CAEEL/930-1012,(O16229_CAEEL/378-460,Q93161_CAEEL/972-1054))))),((TDT_AMBME/27-111,(((TDT_MONDO/27-111,TDT_HUMAN/27-111),TDT_CHICK/27-111),TDT_XENLA/27-111)),TDT_ONCMY/24-108))))),(DNL4_YEAST/681-767,(DNL4_HUMAN/741-831,YPT4_CAEEL/1049-1141))),(YBM5_SCHPO/14-91,((((Q94046_CAEEL/514-600,Q9Z0W6_MOUSE/588-668),(RAD9_YEAST/994-1109,RHP9_SCHPO/535-640)),(YHV4_YEAST/117-213,YBM5_SCHPO/105-183)),(DNL4_YEAST/836-928,(RAD4_SCHPO/392-473,Q20129_CAEEL/724-794))))),(DPB11_YEAST/111-207,FCP1_YEAST/499-580)),(Q92547_HUMAN/382-459,((((((O15404_HUMAN/535-609,Q9ZR18_ARATH/553-629),(XRCC1_MOUSE/315-390,(RAD4_SCHPO/2-79,Q92547_HUMAN/928-1006))),(Q20129_CAEEL/173-249,Q92547_HUMAN/129-204)),((O04251_ARATH/1053-1132,Q92547_HUMAN/1288-1366),((BRCA1_RAT/1588-1669,BRCA1_HUMAN/1642-1723),(O49549_ARATH/1115-1196,Q9ZWC2_ARATH/495-577)))),((PARP4_HUMAN/1-81,((RAD4_SCHPO/97-172,((((YBM5_SCHPO/311-386,YHV4_YEAST/370-453),(O15404_HUMAN/376-451,Q94046_CAEEL/620-694)),Q92547_HUMAN/669-753),ECT2_MOUSE/91-166)),Q92547_HUMAN/223-299)),Q9Z0W6_MOUSE/94-170)),(Q09615_CAEEL/251-326,REV1_YEAST/161-236)))),(((BRCA1_RAT/1701-1787,BRCA1_HUMAN/1756-1842),(O49549_ARATH/1230-1322,Q9ZWC2_ARATH/611-717)),((O97209_LEIMA/317-390,(PESC_YEAST/355-436,(PESC_SCHPO/348-428,(PESC_HUMAN/322-402,PESC_BRARE/323-403)))),((Q22590_CAEEL/206-280,DNL3_MOUSE/939-1006),XRCC1_HUMAN/538-616)))),(RAD4_SCHPO/298-371,DPB11_YEAST/322-405)),YEAE_SCHPO/280-351),RAP1_YEAST/121-195),(((CHS5_CANAL/164-246,CHS5_YEAST/166-249),CHS5_SCHPO/167-243),((DNLJ_BORBU/583-659,(DNLJ_TREPA/562-642,DNLJ_TREPA/654-729)),(O96271_PLAF7/208-298,((Q57489_BACNO/36-112,(DNLJ_CHLTR/581-657,((DNLJ_HAEIN/601-677,(DNLJ_ECOLI/593-669,(DNLJ_ZYMMO/645-721,DNLJ_RICPR/610-686))),(DNLJ_BACSU/590-666,DNLJ_BACST/589-665)))),((((DNLJ_MYCLE/607-683,DNLJ_STRCO/643-719),DNLJ_RHOMR/633-709),(Q61944_MOUSE/341-418,(RFC1_DROME/232-309,(RFC1_YEAST/153-230,(RFC1_SCHPO/236-313,P78622_EMENI/323-400))))),((DNLJ_HELPY/577-652,DNLJ_THETH/589-664),(DNLJ_AQUAE/619-696,(DNLJ_CHLPN/583-659,DNLJ_SYNY3/591-667))))))))),(O24570_MAIZE/374-452,Q9ZP54_ARATH/394-471)),PARP1_MOUSE/384-462,PARP1_CHICK/382-460);
(((((((((((((((((YHV4_YEAST/2-103:1.43272,YHV4_YEAST/827-910:2.93555):0.38855,(Q9Z0W6_MOUSE/8-80:1.43864,Q94046_CAEEL/930-1016:1.26982):0.12768):0.33359,Q20129_CAEEL/496-574:1.20597):0.09044,(Q92547_HUMAN/576-648:1.72260,(DNL4_HUMAN/587-663:0.36119,Q20129_CAEEL/632-704:2.06587):0.61066):0.10321):0.05933,DNLI_CANAL/673-756:0.97239):0.15403,((O16568_CAEEL/1044-1144:1.24779,(O44844_CAEEL/154-256:0.97437,YBM5_SCHPO/767-859:1.43890):0.33911):0.45791,((YEAE_SCHPO/381-469:1.72000,(YHV4_YEAST/261-352:0.99514,YBM5_SCHPO/216-293:0.99261):0.30856):0.57361,((O76369_CAEEL/856-950:0.52386,(Q18105_CAEEL/697-783:0.57145,(Q18104_CAEEL/407-489:0.30216,(YPT4_CAEEL/930-1012:0.19781,(O16229_CAEEL/378-460:0.17446,Q93161_CAEEL/972-1054:0.20029):0.04440):0.09233):0.16135):0.33902):1.30161,((TDT_AMBME/27-111:0.23378,(((TDT_MONDO/27-111:0.20194,TDT_HUMAN/27-111:0.14758):0.08796,TDT_CHICK/27-111:0.22767):0.14068,TDT_XENLA/27-111:0.18499):0.06286):0.00000,TDT_ONCMY/24-108:0.48104):1.13882):0.38495):0.05633):0.14853):0.23289,(DNL4_YEAST/681-767:1.03132,(DNL4_HUMAN/741-831:1.07089,YPT4_CAEEL/1049-1141:1.96106):0.29583):0.14095):0.21946,(YBM5_SCHPO/14-91:1.40562,((((Q94046_CAEEL/514-600:0.85122,Q9Z0W6_MOUSE/588-668:1.13525):0.39055,(RAD9_YEAST/994-1109:1.35518,RHP9_SCHPO/535-640:0.57689):0.62343):0.05313,(YHV4_YEAST/117-213:1.15606,YBM5_SCHPO/105-183:1.12878):0.33482):0.11936,(DNL4_YEAST/836-928:1.63846,(RAD4_SCHPO/392-473:1.09936,Q20129_CAEEL/724-794:1.42707):0.21502):0.43145):0.11205):0.05920):0.00000,(DPB11_YEAST/111-207:1.10126,FCP1_YEAST/499-580:0.93538):0.44719):0.16206,(Q92547_HUMAN/382-459:1.52892,((((((O15404_HUMAN/535-609:0.61212,Q9ZR18_ARATH/553-629:0.97359):0.54636,(XRCC1_MOUSE/315-390:0.48727,(RAD4_SCHPO/2-79:0.75940,Q92547_HUMAN/928-1006:0.95606):0.23042):0.47085):0.00358,(Q20129_CAEEL/173-249:0.86134,Q92547_HUMAN/129-204:0.58809):0.45065):0.12961,((O04251_ARATH/1053-1132:0.91990,Q92547_HUMAN/1288-1366:0.78629):0.26564,((BRCA1_RAT/1588-1669:0.10316,BRCA1_HUMAN/1642-1723:0.23517):1.06844,(O49549_ARATH/1115-1196:0.41758,Q9ZWC2_ARATH/495-577:0.54440):0.21602):0.52853):0.24552):0.34228,((PARP4_HUMAN/1-81:1.09557,((RAD4_SCHPO/97-172:0.89438,((((YBM5_SCHPO/311-386:0.66118,YHV4_YEAST/370-453:1.05588):0.29528,(O15404_HUMAN/376-451:0.47701,Q94046_CAEEL/620-694:0.70745):0.21937):0.13045,Q92547_HUMAN/669-753:0.98157):0.22720,ECT2_MOUSE/91-166:0.94086):0.15786):0.11093,Q92547_HUMAN/223-299:0.54375):0.22881):0.16710,Q9Z0W6_MOUSE/94-170:0.77938):0.03518):0.12442,(Q09615_CAEEL/251-326:1.41715,REV1_YEAST/161-236:0.36302):0.67572):0.00000):0.06917):0.00000,(((BRCA1_RAT/1701-1787:0.28809,BRCA1_HUMAN/1756-1842:0.27286):0.84800,(O49549_ARATH/1230-1322:0.54786,Q9ZWC2_ARATH/611-717:0.41621):0.35919):0.17080,((O97209_LEIMA/317-390:0.35033,(PESC_YEAST/355-436:0.52236,(PESC_SCHPO/348-428:0.32838,(PESC_HUMAN/322-402:0.20363,PESC_BRARE/323-403:0.12559):0.23278):0.18534):0.35443):0.56752,((Q22590_CAEEL/206-280:1.14918,DNL3_MOUSE/939-1006:0.95557):0.26116,XRCC1_HUMAN/538-616:0.92278):0.37156):0.22718):0.48635):0.11356,(RAD4_SCHPO/298-371:0.83870,DPB11_YEAST/322-405:1.01216):0.83125):0.26046,YEAE_SCHPO/280-351:1.15897):0.02533,RAP1_YEAST/121-195:1.26318):0.09969,(((CHS5_CANAL/164-246:0.25143,CHS5_YEAST/166-249:0.50977):0.69079,CHS5_SCHPO/167-243:0.47902):0.66899,((DNLJ_BORBU/583-659:0.90225,(DNLJ_TREPA/562-642:0.56654,DNLJ_TREPA/654-729:0.54145):0.24944):0.08572,(O96271_PLAF7/208-298:0.76493,((Q57489_BACNO/36-112:0.75207,(DNLJ_CHLTR/581-657:0.38389,((DNLJ_HAEIN/601-677:0.33717,(DNLJ_ECOLI/593-669:0.07770,(DNLJ_ZYMMO/645-721:0.24740,DNLJ_RICPR/610-686:0.36711):0.26023):0.05463):0.09219,(DNLJ_BACSU/590-666:0.17813,DNLJ_BACST/589-665:0.24046):0.09291):0.16273):0.13012):0.00000,((((DNLJ_MYCLE/607-683:0.34359,DNLJ_STRCO/643-719:0.14907):0.33707,DNLJ_RHOMR/633-709:0.29286):0.06463,(Q61944_MOUSE/341-418:0.24024,(RFC1_DROME/232-309:0.29783,(RFC1_YEAST/153-230:0.37928,(RFC1_SCHPO/236-313:0.40274,P78622_EMENI/323-400:0.24427):0.07468):0.25092):0.12421):0.30136):0.10630,((DNLJ_HELPY/577-652:0.40570,DNLJ_THETH/589-664:0.34039):0.10237,(DNLJ_AQUAE/619-696:0.54847,(DNLJ_CHLPN/583-659:0.46574,DNLJ_SYNY3/591-667:0.32692):0.05211):0.03136):0.06345):0.06792):0.10300):0.06011):0.48700):0.20544):0.42782,(O24570_MAIZE/374-452:0.66992,Q9ZP54_ARATH/394-471:0.35522):0.57731):0.76068,PARP1_MOUSE/384-462:0.03179,PARP1_CHICK/382-460:0.25994);