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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00513 phylogeny
for restricted amino acid alignment


 
(((((((VL2_HPV34/5-464,((VL2_HPV35/5-460,(VL2_HPV16/5-464,VL2_HPV31/5-457)),(VL2_HPV33/5-458,VL2_HPV52/5-457))),(VL2_HPV32/5-467,(VL2_HPV07/5-455,(VL2_HPV11/4-448,(VL2_HPV13/5-456,VL2_PCPV1/5-456))))),((VL2_HPV03/5-464,((VL2_HPV18/5-453,VL2_HPV39/5-461),(VL2_HPV26/5-463,(VL2_HPV30/5-454,VL2_HPV56/5-455)))),VL2_HPV27/3-455)),(VL2_HPV04/3-520,(VL2_HPV1A/3-507,VL2_HPV63/3-504))),(VL2_HPV05/3-518,VL2_HPV14/3-519)),VL2_HPV49/3-521),VL2_HPV09/3-533,VL2_HPV15/3-533);
(((((((VL2_HPV34/5-464:0.36311,((VL2_HPV35/5-460:0.19579,(VL2_HPV16/5-464:0.23274,VL2_HPV31/5-457:0.23954):0.05495):0.11666,(VL2_HPV33/5-458:0.17060,VL2_HPV52/5-457:0.18586):0.11714):0.09147):0.10162,(VL2_HPV32/5-467:0.40408,(VL2_HPV07/5-455:0.33515,(VL2_HPV11/4-448:0.17247,(VL2_HPV13/5-456:0.08630,VL2_PCPV1/5-456:0.16139):0.10719):0.17399):0.11119):0.05275):0.12797,((VL2_HPV03/5-464:0.25243,((VL2_HPV18/5-453:0.20678,VL2_HPV39/5-461:0.19605):0.09803,(VL2_HPV26/5-463:0.32459,(VL2_HPV30/5-454:0.08459,VL2_HPV56/5-455:0.16083):0.20436):0.07746):0.08472):0.07573,VL2_HPV27/3-455:0.31225):0.11874):0.76012,(VL2_HPV04/3-520:0.71232,(VL2_HPV1A/3-507:0.33467,VL2_HPV63/3-504:0.34622):0.37013):0.11723):0.25958,(VL2_HPV05/3-518:0.12920,VL2_HPV14/3-519:0.11953):0.06738):0.04510,VL2_HPV49/3-521:0.19089):0.15009,VL2_HPV09/3-533:0.09882,VL2_HPV15/3-533:0.13489);