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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00513 phylogeny
for nucleotide alignment


 
(((((((((VL2_HPV18/5-453,VL2_HPV39/5-461),(VL2_HPV26/5-463,(VL2_HPV30/5-454,VL2_HPV56/5-455))),(VL2_HPV03/5-464,VL2_HPV27/3-455)),((VL2_HPV32/5-467,(VL2_HPV07/5-455,(VL2_HPV11/4-448,(VL2_HPV13/5-456,VL2_PCPV1/5-456)))),(VL2_HPV34/5-464,((VL2_HPV31/5-457,(VL2_HPV16/5-464,VL2_HPV35/5-460)),(VL2_HPV33/5-458,VL2_HPV52/5-457))))),(VL2_HPV1A/3-507,VL2_HPV63/3-504)),VL2_HPV04/3-520),(VL2_HPV05/3-518,VL2_HPV14/3-519)),VL2_HPV49/3-521),VL2_HPV09/3-533,VL2_HPV15/3-533);
(((((((((VL2_HPV18/5-453:0.21400,VL2_HPV39/5-461:0.22418):0.07148,(VL2_HPV26/5-463:0.26931,(VL2_HPV30/5-454:0.11763,VL2_HPV56/5-455:0.15451):0.13807):0.05288):0.05252,(VL2_HPV03/5-464:0.21953,VL2_HPV27/3-455:0.34653):0.07344):0.10265,((VL2_HPV32/5-467:0.31814,(VL2_HPV07/5-455:0.28176,(VL2_HPV11/4-448:0.17907,(VL2_HPV13/5-456:0.09403,VL2_PCPV1/5-456:0.12573):0.11813):0.12818):0.07899):0.06143,(VL2_HPV34/5-464:0.28835,((VL2_HPV31/5-457:0.23265,(VL2_HPV16/5-464:0.18100,VL2_HPV35/5-460:0.18273):0.04060):0.07976,(VL2_HPV33/5-458:0.15865,VL2_HPV52/5-457:0.19296):0.09558):0.06758):0.07193):0.06267):0.37821,(VL2_HPV1A/3-507:0.31555,VL2_HPV63/3-504:0.31134):0.16255):0.06939,VL2_HPV04/3-520:0.47536):0.20962,(VL2_HPV05/3-518:0.19711,VL2_HPV14/3-519:0.19785):0.05787):0.04266,VL2_HPV49/3-521:0.19210):0.11798,VL2_HPV09/3-533:0.14517,VL2_HPV15/3-533:0.15460);