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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00505 phylogeny
for amino acid alignment


 
(((((((HMGL_TRYBR/118-186,NHP1_BABBO/23-93),(HMGH_IRV6/54-122,NHP6A_YEAST/21-89)),(((SOX4_HUMAN/59-127,SOX9_CHICK/106-174),(SOX2_CHICK/39-107,SRY_GORGO/60-128)),(LEF1_MOUSE/297-365,((((FPR1_PODAN/169-237,MATB_NEUCR/116-184),MTMC_SCHPO/103-171),(MATD_NEUCR/147-215,SMR2_PODAN/161-229)),MAT2_COCHE/131-199)))),(((ABF2_YEAST/43-111,(((HMGL_SOYBN/44-113,HMGL_IPONI/36-105),HMGL_VICFA/45-114),HMGL_WHEAT/42-111)),(SSRP_HUMAN/547-615,(HMG1A_CHITE/5-71,SSRP_DROME/555-621))),(HMG1_RAT/94-162,HMGH_STRPU/100-168))),(HMGB_TETTH/18-86,HMG_TETPY/11-79)),UBF1_HUMAN/112-180),TFAM_MOUSE/49-117,TFAM_HUMAN/50-118);
(((((((HMGL_TRYBR/118-186:0.74805,NHP1_BABBO/23-93:0.34184):0.15510,(HMGH_IRV6/54-122:0.92756,NHP6A_YEAST/21-89:0.19309):0.22393):0.18201,(((SOX4_HUMAN/59-127:0.26495,SOX9_CHICK/106-174:0.22424):0.09740,(SOX2_CHICK/39-107:0.02899,SRY_GORGO/60-128:0.35773):0.15723):0.40933,(LEF1_MOUSE/297-365:0.75446,((((FPR1_PODAN/169-237:0.32509,MATB_NEUCR/116-184:0.39980):0.21963,MTMC_SCHPO/103-171:0.44543):0.14387,(MATD_NEUCR/147-215:0.75131,SMR2_PODAN/161-229:0.35087):0.46604):0.23200,MAT2_COCHE/131-199:0.78185):0.24885):0.16324):0.42015):0.08372,(((ABF2_YEAST/43-111:0.74347,(((HMGL_SOYBN/44-113:0.20593,HMGL_IPONI/36-105:0.22146):0.07701,HMGL_VICFA/45-114:0.19435):0.02980,HMGL_WHEAT/42-111:0.24342):0.25843):0.18559,(SSRP_HUMAN/547-615:0.31223,(HMG1A_CHITE/5-71:0.13675,SSRP_DROME/555-621:0.41277):0.20164):0.27202):0.17979,(HMG1_RAT/94-162:0.38970,HMGH_STRPU/100-168:0.45078):0.14139):0.00000):0.23605,(HMGB_TETTH/18-86:0.68126,HMG_TETPY/11-79:0.48682):0.11267):0.32424,UBF1_HUMAN/112-180:0.71283):0.56150,TFAM_MOUSE/49-117:0.19499,TFAM_HUMAN/50-118:0.29179);