EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00502 - Phycobilisome)
Phycobilisome protein
(Pfam reference: accession no. PF00502)
(Interpro reference: accession no. IPR001659)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
22 sequences @ 185 aa
(ave. pairwise identity: 0.36)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 9.40)
nucleotides
(available for above)
19 sequences @ 555 bp
(ave. pairwise identity: 0.46)
New Hampshire format
(total tree length: 7.10)
amino acids, restricted set
(corresp. to available nt seqs)
19 sequences @ 185 aa
(ave. pairwise identity: 0.35)
New Hampshire format
(total tree length: 8.49)