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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00413 phylogeny
for restricted amino acid alignment


 
((((((((((((((MMP12_RAT/104-259,MMP12_RABIT/103-258),MMP1_HUMAN/108-261),(MMP10_MOUSE/108-264,MMP3_HORSE/108-264)),(((O93342_CHICK/111-267,Q9GKE1_TUPGB/105-261),(Q7SZS8_XENLA/101-256,Q7SZT5_XENLA/99-254)),(((((Q8AX63_SILAS/120-434,Q7SZM5_BRARE/118-446),(Q7T317_BRARE/116-444,Q98856_CYNPY/116-444)),(O93363_CHICK/19-174,(Q7T0K9_AMBME/32-187,Q10833_XENLA/113-268))),Q9I956_SALSA/104-257),((MMP18_XENLA/108-263,Q7SYX1_XENLA/107-262),Q98857_CYNPY/106-261)))),(((MMP7_FELCA/98-254,MMP7_HUMAN/103-259),MMP7_RAT/106-262),(Q800I1_CYNPY/113-268,MMP20_BOVIN/114-269))),(((MMP15_HUMAN/138-304,(Q7T2J1_BRARE/111-277,MMP14_HUMAN/118-284)),Q86VV6_HUMAN/143-308),Q86GD7_CRAGI/161-317)),((MMP19_HUMAN/103-256,(Q9NAY8_9BILA/49-215,O16901_CAEEL/139-304)),Q8BG29_MOUSE/129-284)),((HE_HEMPU/176-330,HE_PARLI/173-327),(Q8MLN6_DROME/144-297,Q7QIJ4_ANOGA/82-235))),((Q80UM9_MOUSE/131-294,Q8QGW9_ORYLA/122-276),(O44836_CAEEL/134-321,Q8MPP3_DROME/143-301))),(Q7UJQ3_RHOBA/41-202,Q9U9P0_HYDAT/109-271)),(((Q9LEL9_CUCSA/168-319,MEP1_SOYBN/142-302),((Q9ZR44_MEDTR/1-147,((Q94LQ4_ORYSA/149-313,(Q94LQ0_ORYSA/56-226,(Q94LQ1_ORYSA/53-228,Q94LQ2_ORYSA/38-207))),(O23507_ARATH/158-319,O65340_ARATH/133-295))),(Q9ZUJ5_ARATH/151-314,(O04529_ARATH/163-324,O48680_ARATH/160-322)))),(Q8JKP2_9VIRU/295-457,((Q9DVZ7_9BACU/27-186,Q9PZ03_GVXN/60-226),(Q8JS18_9BACU/76-232,((Q7T5P6_GVCL/103-278,Q91F09_GVCP/128-302),Q7T9X8_GVAO/26-186)))))),Q22650_CAEEL/48-206),(O61266_CAEEL/102-257,Q23227_CAEEL/117-268)),MMP21_XENLA/205-362,MMP21_MOUSE/169-326);
((((((((((((((MMP12_RAT/104-259:0.15386,MMP12_RABIT/103-258:0.18948):0.17385,MMP1_HUMAN/108-261:0.29711):0.03191,(MMP10_MOUSE/108-264:0.12099,MMP3_HORSE/108-264:0.21406):0.16917):0.04287,(((O93342_CHICK/111-267:0.18097,Q9GKE1_TUPGB/105-261:0.18181):0.17216,(Q7SZS8_XENLA/101-256:0.11933,Q7SZT5_XENLA/99-254:0.15165):0.12560):0.07998,(((((Q8AX63_SILAS/120-434:1.05053,Q7SZM5_BRARE/118-446:0.05573):0.13762,(Q7T317_BRARE/116-444:0.12406,Q98856_CYNPY/116-444:0.16071):0.17896):0.15260,(O93363_CHICK/19-174:0.13593,(Q7T0K9_AMBME/32-187:0.09867,Q10833_XENLA/113-268:0.15092):0.09076):0.10937):0.05452,Q9I956_SALSA/104-257:0.25310):0.10964,((MMP18_XENLA/108-263:0.20669,Q7SYX1_XENLA/107-262:0.17848):0.07519,Q98857_CYNPY/106-261:0.16970):0.02473):0.03444):0.06036):0.06502,(((MMP7_FELCA/98-254:0.19522,MMP7_HUMAN/103-259:0.07476):0.07550,MMP7_RAT/106-262:0.24038):0.27420,(Q800I1_CYNPY/113-268:0.23373,MMP20_BOVIN/114-269:0.29786):0.03715):0.06650):0.09824,(((MMP15_HUMAN/138-304:0.19738,(Q7T2J1_BRARE/111-277:0.14810,MMP14_HUMAN/118-284:0.08530):0.10130):0.09367,Q86VV6_HUMAN/143-308:0.08288):0.34957,Q86GD7_CRAGI/161-317:0.34136):0.06440):0.04511,((MMP19_HUMAN/103-256:0.52856,(Q9NAY8_9BILA/49-215:0.88180,O16901_CAEEL/139-304:0.30280):0.21732):0.07738,Q8BG29_MOUSE/129-284:0.50457):0.14567):0.04513,((HE_HEMPU/176-330:0.12077,HE_PARLI/173-327:0.12573):0.26202,(Q8MLN6_DROME/144-297:0.16389,Q7QIJ4_ANOGA/82-235:0.13005):0.30862):0.13106):0.10256,((Q80UM9_MOUSE/131-294:0.52863,Q8QGW9_ORYLA/122-276:0.50931):0.08055,(O44836_CAEEL/134-321:0.69184,Q8MPP3_DROME/143-301:0.42137):0.10576):0.08875):0.18542,(Q7UJQ3_RHOBA/41-202:0.98170,Q9U9P0_HYDAT/109-271:0.34576):0.18503):0.08044,(((Q9LEL9_CUCSA/168-319:0.57707,MEP1_SOYBN/142-302:0.31795):0.09106,((Q9ZR44_MEDTR/1-147:0.76084,((Q94LQ4_ORYSA/149-313:0.16788,(Q94LQ0_ORYSA/56-226:0.21898,(Q94LQ1_ORYSA/53-228:0.20544,Q94LQ2_ORYSA/38-207:0.28949):0.17350):0.08842):0.12185,(O23507_ARATH/158-319:0.22090,O65340_ARATH/133-295:0.20937):0.08732):0.20993):0.00428,(Q9ZUJ5_ARATH/151-314:0.21988,(O04529_ARATH/163-324:0.08930,O48680_ARATH/160-322:0.12315):0.06197):0.18519):0.11195):0.29841,(Q8JKP2_9VIRU/295-457:0.67016,((Q9DVZ7_9BACU/27-186:0.42847,Q9PZ03_GVXN/60-226:0.50544):0.05280,(Q8JS18_9BACU/76-232:0.41599,((Q7T5P6_GVCL/103-278:0.17263,Q91F09_GVCP/128-302:0.27210):0.24166,Q7T9X8_GVAO/26-186:0.44809):0.14077):0.14435):0.14980):0.09836):0.10366):0.13691,Q22650_CAEEL/48-206:0.64260):0.13434,(O61266_CAEEL/102-257:0.84330,Q23227_CAEEL/117-268:0.81069):0.14629):0.53969,MMP21_XENLA/205-362:0.20002,MMP21_MOUSE/169-326:0.10521);