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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00413 phylogeny
for nucleotide alignment


 
((((((((((((((((((((((MMP18_XENLA/108-263,Q98857_CYNPY/106-261),Q7SYX1_XENLA/107-262),(((MMP12_RAT/104-259,MMP12_RABIT/103-258),((MMP10_MOUSE/108-264,MMP3_HORSE/108-264),MMP1_HUMAN/108-261)),((O93342_CHICK/111-267,Q9GKE1_TUPGB/105-261),(Q7SZS8_XENLA/101-256,Q7SZT5_XENLA/99-254)))),(MMP20_BOVIN/114-269,(Q800I1_CYNPY/113-268,((MMP7_FELCA/98-254,MMP7_HUMAN/103-259),MMP7_RAT/106-262)))),(Q9I956_SALSA/104-257,(Q7T0K9_AMBME/32-187,(O93363_CHICK/19-174,Q10833_XENLA/113-268)))),(((Q7T317_BRARE/116-444,Q98856_CYNPY/116-444),Q7SZM5_BRARE/118-446),Q8AX63_SILAS/120-434)),((((Q7UJQ3_RHOBA/41-202,(Q8MLN6_DROME/144-297,Q7QIJ4_ANOGA/82-235)),(HE_HEMPU/176-330,HE_PARLI/173-327)),Q8QGW9_ORYLA/122-276),((Q80UM9_MOUSE/131-294,(Q8BG29_MOUSE/129-284,MMP19_HUMAN/103-256)),((MMP15_HUMAN/138-304,(Q7T2J1_BRARE/111-277,MMP14_HUMAN/118-284)),Q86VV6_HUMAN/143-308)))),Q86GD7_CRAGI/161-317),(Q9NAY8_9BILA/49-215,O16901_CAEEL/139-304)),(O44836_CAEEL/134-321,Q8MPP3_DROME/143-301)),Q9U9P0_HYDAT/109-271),((((O61266_CAEEL/102-257,Q23227_CAEEL/117-268),Q8JKP2_9VIRU/295-457),Q22650_CAEEL/48-206),(MMP21_XENLA/205-362,MMP21_MOUSE/169-326))),(((Q8JS18_9BACU/76-232,(Q7T5P6_GVCL/103-278,Q91F09_GVCP/128-302)),Q7T9X8_GVAO/26-186),(Q9PZ03_GVXN/60-226,Q9DVZ7_9BACU/27-186))),Q9LEL9_CUCSA/168-319),MEP1_SOYBN/142-302),Q9ZR44_MEDTR/1-147),(Q9ZUJ5_ARATH/151-314,(O04529_ARATH/163-324,O48680_ARATH/160-322))),O65340_ARATH/133-295),O23507_ARATH/158-319),Q94LQ4_ORYSA/149-313),Q94LQ0_ORYSA/56-226),Q94LQ1_ORYSA/53-228,Q94LQ2_ORYSA/38-207);
((((((((((((((((((((((MMP18_XENLA/108-263:0.19983,Q98857_CYNPY/106-261:0.21194):0.03026,Q7SYX1_XENLA/107-262:0.20212):0.02498,(((MMP12_RAT/104-259:0.11689,MMP12_RABIT/103-258:0.11163):0.19595,((MMP10_MOUSE/108-264:0.12761,MMP3_HORSE/108-264:0.12567):0.12821,MMP1_HUMAN/108-261:0.20429):0.04409):0.03293,((O93342_CHICK/111-267:0.18416,Q9GKE1_TUPGB/105-261:0.19451):0.05842,(Q7SZS8_XENLA/101-256:0.11922,Q7SZT5_XENLA/99-254:0.11628):0.19343):0.07196):0.05217):0.02514,(MMP20_BOVIN/114-269:0.24617,(Q800I1_CYNPY/113-268:0.23361,((MMP7_FELCA/98-254:0.15705,MMP7_HUMAN/103-259:0.09174):0.06842,MMP7_RAT/106-262:0.17837):0.19627):0.04675):0.09562):0.04776,(Q9I956_SALSA/104-257:0.23499,(Q7T0K9_AMBME/32-187:0.13317,(O93363_CHICK/19-174:0.18724,Q10833_XENLA/113-268:0.14778):0.06944):0.07353):0.06499):0.08813,(((Q7T317_BRARE/116-444:0.16801,Q98856_CYNPY/116-444:0.23642):0.10665,Q7SZM5_BRARE/118-446:0.21441):0.04473,Q8AX63_SILAS/120-434:0.69452):0.02710):0.07618,((((Q7UJQ3_RHOBA/41-202:0.57495,(Q8MLN6_DROME/144-297:0.17070,Q7QIJ4_ANOGA/82-235:0.20952):0.06131):0.08897,(HE_HEMPU/176-330:0.16222,HE_PARLI/173-327:0.12428):0.28945):0.12836,Q8QGW9_ORYLA/122-276:0.30801):0.08883,((Q80UM9_MOUSE/131-294:0.35013,(Q8BG29_MOUSE/129-284:0.36800,MMP19_HUMAN/103-256:0.33251):0.12990):0.07758,((MMP15_HUMAN/138-304:0.15791,(Q7T2J1_BRARE/111-277:0.21771,MMP14_HUMAN/118-284:0.10620):0.09021):0.03414,Q86VV6_HUMAN/143-308:0.12834):0.14834):0.10250):0.04610):0.06119,Q86GD7_CRAGI/161-317:0.34643):0.08431,(Q9NAY8_9BILA/49-215:0.53649,O16901_CAEEL/139-304:0.36488):0.12141):0.08432,(O44836_CAEEL/134-321:0.43428,Q8MPP3_DROME/143-301:0.37089):0.11558):0.04810,Q9U9P0_HYDAT/109-271:0.40844):0.08770,((((O61266_CAEEL/102-257:0.55643,Q23227_CAEEL/117-268:0.58976):0.11473,Q8JKP2_9VIRU/295-457:0.40075):0.07733,Q22650_CAEEL/48-206:0.48559):0.04509,(MMP21_XENLA/205-362:0.24198,MMP21_MOUSE/169-326:0.13185):0.46367):0.10458):0.05653,(((Q8JS18_9BACU/76-232:0.35886,(Q7T5P6_GVCL/103-278:0.17694,Q91F09_GVCP/128-302:0.27148):0.19267):0.05106,Q7T9X8_GVAO/26-186:0.35620):0.08758,(Q9PZ03_GVXN/60-226:0.37746,Q9DVZ7_9BACU/27-186:0.40818):0.09152):0.15022):0.18520,Q9LEL9_CUCSA/168-319:0.39834):0.08585,MEP1_SOYBN/142-302:0.37597):0.10950,Q9ZR44_MEDTR/1-147:0.50615):0.10761,(Q9ZUJ5_ARATH/151-314:0.22373,(O04529_ARATH/163-324:0.11746,O48680_ARATH/160-322:0.13970):0.04874):0.12472):0.12705,O65340_ARATH/133-295:0.19400):0.09174,O23507_ARATH/158-319:0.24041):0.19279,Q94LQ4_ORYSA/149-313:0.11437):0.05883,Q94LQ0_ORYSA/56-226:0.13540):0.08133,Q94LQ1_ORYSA/53-228:0.10815,Q94LQ2_ORYSA/38-207:0.14154);