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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00405 alignment
(8 sequences with 350 aa)


TRFM_HUMAN/23-357 VRWCATSDPEQHKCGNMSEAFREAG..iQPSLLCVRGTSADHCVQLIAAQEADAITLDGGAIYEAG-KEHGLKPVVGEVYD--QEVGTSYYAVAVVRRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMG---CDVLKAVSDYFGGSCVPGAGEtSYSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDGKTLPswgqallsQDFELLCRDGSRADVTEWRQCHLARVPAHAVVVRAdTDGG--LIFRLLNEGQRLFSHE-GSSFQMFSSEAYG.--QKDLLFKDSTSELVPIATQT-YEAWLGHEYLHAMKGLLC
TRFL_BOVIN/25-352 VRWCTISQPEWFKCRRWQWRMKKLG...APSITCVRRAFALECIRAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQLDQLQGRKSCHTGLGRSAGWIIPMG--ILRPYLSWT-ESLEPLQGAVAKFFSASCVPCIDR.QAYPNLCQLCKGEGENQ--CACSSREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPEKADR........DQYELLCLNNSRAPVDAFKECHLAQVPSHAVVARS.VDGKEDLIWKLLSKAQEKFGKNKSRSFQLFGSPPGQ.---RDLLFKDSALGFLRIPSKVDSALYLGSRYLTTLKNLRE
TRFE_HUMAN/25-347 VRWCAVSEHEATKCQSFRDHMKSVIpsdGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIG--LLYCDLPE---PRKPLEKAVANFFSGSCAPCADG.TDFPQLCQLCPG-------CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADR........DQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARS.MGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHG-.---KDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLRE
TRFE_HORSE/23-349 VRWCTVSNHEVSKCASFRDSMKSIVpa.PPLVACVKRTSYLECIKAIADNEADAVTLDAGLVFEAGLSPYNLKPVVAEFYGSKTEPQTHYYAVAVVKKNSNFQLNQLQGKKSCHTGLGRSAGWNIPIG--LLYWQLPE---PRESLQKAVSNFFAGSCVPCADR.TAVPNLCQLCVGKGTDK--CACSNHEPYFGYSGAFKCLADGAGDVAFVKHSTVLENLPQEADR........DEYQLLCRDNTRKSVDEYKDCYLASIPSHAVVARS.VDGKEDLIWGLLNQAQEHFGTEKSKDFHLFSSPHG-.---KDLLFKDSALGFLRIPPAMDTWLYLGYEYVTAIRNLRE
TRFL_HUMAN/26-353 VQWCAVSQPEATKCFQWQRNMRKVR...GPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIG--TLRPFLNWTG-PPEPIEAAVARFFSASCVPGADK.GQFPNLCRLCAGTGENK--CAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAER........DEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARS.VNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ.---KDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRK
TRFL_MOUSE/24-351 VRWCAVSNSEEEKCLRWQNEMRKVG...GPPLSCVKKSSTRQCIQAIVTNRADAMTLDGGTMFDAGKPPYKLRPVAAEVYGTKEQPRTHYYAVAVVKNSSNFHLNQLQGLRSCHTGIGRSAGWKIPIG--TLRPYLNWNG-PPASLEEAVSKFFSKSCVPGAQK.DRFPNLCSSCAGTGANK--CASSPEEPYSGYAGALRCLRDNAGDVAFTRGSTVFEELPNKAER........DQYKLLCPDNTWKPVTEYKECHLAQVPSHAVVSRS.TNDKEEAIWELLRQSQEKFGKKQASGFQLFASPSGQ.---KDLLFKESAIGFVRVPQKVDVGLYLTFSYTTSIQNLNK
TRFE_CHICK/26-352 IRWCTISSPEEKKCNNLRDLTQQER...-ISLTCVQKATYLDCIKAIANNEADAISLDGGQAFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAIEWEGIESGSVEQAVAKFFSASCVPGAT-.-IEQKLCRQCKGD--PK--TKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQ--K........DEYELLCLDGSRQPVDNYKTCNWARVAAHAVVARD.DN-KVEDIWSFLSKAQSDFGVDTKSDFHLFGPPGKKdPVLKDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQSMRK
TRF1_SALSA/25-329 VKWCVKSEQELRKCHDLAAKVA---...--EFSCVRKDGSFECIQAIKGGEADAITLDGGDIYTAGLTNYGLQPIIAEDYG--EDSDTCYYAVAVAKKGTAFGFKTLRGKKSCHTGLGKSAGWNIPIGTLVTESQIRWAGIEDRPVESAVSDFFNASCAPGATM.G--SKLCQLCKG----D--CSRSHKEPYYDYAGAFQCLKDGAGDVAFIKPLAVPAAEKAS---........--YELLCKDGTRASIDSYKTCHLARVPAHAVVSR-.KDPE--LANRIYNKLVA------VKDFNLFSSDG--.YAAKNLMFKDSAQKLVQLPTTTDSFLYLGAEYMSTIRSLKK