EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00405 alignment
(8 sequences with 1050 bp)


TRFM_HUMAN/23-357 GTGCGGTGGTGCGCCACCTCGGACCCAGAGCAGCACAAGTGCGGCAACATGAGCGAGGCCTTCCGGGAAGCGGGC......atcCAGCCCTCCCTCCTCTGCGTCCGGGGCACCTCCGCCGACCACTGCGTCCAGCTCATCGCGGCCCAGGAGGCTGACGCCATCACTCTGGATGGAGGAGCCATCTATGAGGCGGGA---AAGGAGCACGGCCTGAAGCCGGTGGTGGGCGAAGTGTACGAT------CAAGAGGTCGGTACCTCCTATTACGCCGTGGCTGTGGTCAGGAGGAGCTCCCATGTGACCATTGACACCCTGAAAGGCGTGAAGTCCTGCCACACGGGCATCAATCGCACAGTGGGCTGGAACGTGCCCGTGGGCTACCTGGTGGAGAGCGGCCGCCTCTCGGTGATGGGC---------TGCGATGTACTCAAAGCTGTCAGCGACTATTTTGGGGGCAGCTGCGTCCCGGGGGCAGGAGAGaccAGTTACTCTGAGTCCCTCTGTCGCCTCTGCAGGGGTGACAGCTCTGGGGAAGGGGTGTGTGACAAGAGCCCCCTGGAGAGATACTACGACTACAGCGGGGCCTTCCGGTGCCTGGCGGAAGGGGCAGGGGACGTGGCTTTTGTGAAGCACAGCACGGTACTGGAGAACACGGATGGGAAGACGCTTCCCtcctggggccaggccctgctgtcaCAGGACTTCGAGCTGCTGTGCCGGGATGGTAGCCGGGCCGATGTCACCGAGTGGAGGCAGTGCCATCTGGCCCGGGTGCCTGCTCACGCCGTGGTGGTCCGGGCCgacACAGATGGGGGC------CTCATCTTCCGGCTGCTCAACGAAGGCCAGCGTCTGTTCAGCCACGAG---GGCAGCAGCTTCCAGATGTTCAGCTCTGAGGCCTATGGC...------CAGAAGGATCTACTCTTCAAAGACTCTACCTCGGAGCTTGTGCCCATCGCCACACAGACC---TATGAGGCGTGGCTGGGCCATGAGTACCTGCACGCCATGAAGGGTCTGCTCTGT
TRFL_BOVIN/25-352 GTTCGATGGTGTACCATCTCCCAACCTGAGTGGTTCAAATGCCGCCGATGGCAGTGGAGGATGAAGAAGCTGGGT.........GCTCCCTCTATCACCTGTGTGAGGAGGGCCTTTGCCTTGGAATGTATCCGGGCCATCGCGGAGAAAAAGGCGGATGCTGTGACCCTGGATGGTGGCATGGTGTTTGAGGCGGGCCGGGACCCCTACAAACTGCGGCCAGTAGCAGCAGAGATCTATGGGACGAAAGAGTCTCCCCAAACCCACTATTATGCTGTGGCCGTCGTGAAGAAGGGCAGCAACTTTCAGCTGGACCAGCTGCAAGGCCGGAAGTCCTGCCATACGGGCCTTGGCAGGTCCGCTGGGTGGATCATCCCTATGGGA------ATCCTTCGCCCGTACTTGAGCTGGACA---GAGTCACTCGAGCCCCTCCAGGGAGCTGTGGCTAAATTCTTCTCTGCCAGCTGTGTTCCCTGCATTGATAGA...CAAGCATACCCCAACCTGTGTCAACTGTGCAAGGGGGAGGGGGAGAACCAG------TGTGCCTGCTCCTCCCGGGAACCATACTTCGGTTATTCTGGTGCCTTCAAGTGTCTGCAGGACGGGGCTGGAGACGTGGCTTTTGTTAAAGAGACGACAGTGTTTGAGAACTTGCCAGAGAAGGCTGACAGG........................GACCAGTATGAGCTTCTCTGCCTGAACAACAGTCGGGCGCCAGTGGATGCGTTCAAGGAGTGCCACCTGGCCCAGGTCCCTTCTCATGCTGTCGTGGCCCGAAGT...GTGGATGGCAAGGAAGACTTGATCTGGAAGCTTCTCAGCAAGGCGCAGGAGAAATTTGGAAAAAACAAGTCTCGGAGCTTCCAGCTCTTTGGCTCTCCACCCGGCCAG...---------AGGGACCTGCTGTTCAAAGACTCTGCTCTTGGGTTTTTGAGGATCCCCTCGAAGGTAGATTCGGCGCTGTACCTGGGCTCCCGCTACTTGACCACCTTGAAGAACCTCAGGGAA
TRFE_HUMAN/25-347 GTGAGATGGTGTGCAGTGTCGGAGCATGAGGCCACTAAGTGCCAGAGTTTCCGCGACCATATGAAAAGCGTCATTccatccgatGGTCCCAGTGTTGCTTGTGTGAAGAAAGCCTCCTACCTTGATTGCATCAGGGCCATTGCGGCAAACGAAGCGGATGCTGTGACACTGGATGCAGGTTTGGTGTATGATGCTTACTTGGCTCCCAATAACCTGAAGCCTGTGGTGGCAGAGTTCTATGGGTCAAAAGAGGATCCACAGACTTTCTATTATGCTGTTGCTGTGGTGAAGAAGGATAGTGGCTTCCAGATGAACCAGCTTCGAGGCAAGAAGTCCTGCCACACGGGTCTAGGCAGGTCCGCTGGGTGGAACATCCCCATAGGC------TTACTTTACTGTGACTTACCTGAG---------CCACGTAAACCTCTTGAGAAAGCAGTGGCCAATTTCTTCTCGGGCAGCTGTGCCCCTTGTGCGGATGGG...ACGGACTTCCCCCAGCTGTGTCAACTGTGTCCAGGG---------------------TGTGGCTGCTCCACCCTTAACCAATACTTCGGCTACTCGGGAGCCTTCAAGTGTCTGAAGGATGGTGCTGGGGATGTGGCCTTTGTCAAGCACTCGACTATATTTGAGAACTTGGCAAACAAGGCTGACAGG........................GACCAGTATGAGCTGCTTTGCCTAGACAACACCCGGAAGCCGGTAGATGAATACAAGGACTGCCACTTGGCCCAGGTCCCTTCTCATACCGTCGTGGCCCGAAGT...ATGGGCGGCAAGGAGGACTTGATCTGGGAGCTTCTCAACCAGGCCCAGGAACATTTTGGCAAAGACAAATCAAAAGAATTCCAACTATTCAGCTCTCCTCATGGG---...---------AAGGACCTGCTGTTTAAGGACTCTGCCCACGGGTTTTTAAAAGTCCCCCCAAGGATGGATGCCAAGATGTACCTGGGCTATGAGTATGTCACTGCCATCCGGAATCTACGGGAA
TRFE_HORSE/23-349 GTGAGATGGTGCACCGTCTCAAATCATGAGGTCAGTAAGTGCGCCAGTTTCCGCGACAGTATGAAAAGCATTGTTcctgct...CCTCCTCTTGTCGCCTGTGTGAAGAGAACCTCCTACCTGGAGTGCATCAAGGCCATTGCGGATAACGAAGCGGATGCTGTGACGTTGGATGCAGGTTTGGTGTTCGAAGCTGGCCTCTCCCCCTACAACCTGAAGCCTGTAGTGGCAGAGTTCTATGGGTCCAAAACTGAGCCACAAACCCACTATTATGCTGTGGCCGTGGTGAAGAAGAACAGCAATTTCCAGCTGAACCAGCTCCAAGGCAAGAAGTCCTGCCACACGGGCCTTGGCAGGTCTGCTGGGTGGAACATCCCCATTGGC------TTACTTTATTGGCAATTGCCTGAG---------CCACGTGAATCTCTTCAGAAAGCAGTGTCCAATTTCTTCGCGGGCAGCTGCGTACCCTGTGCAGATCGG...ACAGCTGTCCCCAACCTGTGTCAACTGTGTGTGGGGAAAGGGACAGACAAG------TGTGCCTGCTCCAACCACGAACCATACTTTGGCTACTCAGGTGCCTTCAAGTGCCTGGCGGATGGCGCTGGGGACGTGGCCTTTGTCAAGCATTCAACAGTATTGGAGAACCTGCCACAAGAGGCTGACAGA........................GACGAGTATCAGCTGCTCTGCAGGGACAACACCCGGAAGTCAGTGGATGAATACAAGGACTGCTACCTGGCCAGCATCCCTTCCCATGCCGTTGTGGCCCGAAGT...GTGGACGGCAAGGAGGACTTGATCTGGGGGCTTCTCAACCAGGCCCAGGAACATTTTGGCACAGAAAAATCTAAAGACTTCCATCTCTTCAGCTCCCCTCATGGG---...---------AAGGACCTGCTGTTTAAGGACTCTGCCCTTGGCTTTTTAAGGATTCCCCCTGCGATGGACACCTGGCTGTACCTGGGATATGAGTATGTCACTGCTATTCGGAATCTAAGGGAA
TRFL_HUMAN/26-353 GTTCAGTGGTGCGCCGTATCCCAACCCGAGGCCACAAAATGCTTCCAATGGCAAAGGAATATGAGAAAAGTGCGT.........GGCCCTCCTGTCAGCTGCATAAAGAGAGACTCCCCCATCCAGTGTATCCAGGCCATTGCGGAAAACAGGGCCGATGCTGTGACCCTTGATGGTGGTTTCATATACGAGGCAGGCCTGGCCCCCTACAAACTGCGACCTGTAGCGGCGGAAGTCTACGGGACCGAAAGACAGCCACGAACTCACTATTATGCCGTGGCTGTGGTGAAGAAGGGCGGCAGCTTTCAGCTGAACGAACTGCAAGGTCTGAAGTCCTGCCACACAGGCCTTCGCAGGACCGCTGGATGGAATGTCCCTATAGGG------ACACTTCGTCCATTCTTGAATTGGACGGGT---CCACCTGAGCCCATTGAGGCAGCTGTGGCCAGGTTCTTCTCAGCCAGCTGTGTTCCCGGTGCAGATAAA...GGACAGTTCCCCAACCTGTGTCGCCTGTGTGCGGGGACAGGGGAAAACAAA------TGTGCCTTCTCCTCCCAGGAACCGTACTTCAGCTACTCTGGTGCCTTCAAGTGTCTGAGAGACGGGGCTGGAGACGTGGCTTTTATCAGAGAGAGCACAGTGTTTGAGGACCTGTCAGACGAGGCTGAAAGG........................GACGAGTATGAGTTACTCTGCCCAGACAACACTCGGAAGCCAGTGGACAAGTTCAAAGACTGCCATCTGGCCCGGGTCCCTTCTCATGCCGTTGTGGCACGAAGT...GTGAATGGCAAGGAGGATGCCATCTGGAATCTTCTCCGCCAGGCACAGGAAAAGTTTGGAAAGGACAAGTCACCGAAATTCCAGCTCTTTGGCTCCCCTAGTGGGCAG...---------AAAGATCTGCTGTTCAAGGACTCTGCCATTGGGTTTTCGAGGGTGCCCCCGAGGATAGATTCTGGGCTGTACCTTGGCTCCGGCTACTTCACTGCCATCCAGAACTTGAGGAAA
TRFL_MOUSE/24-351 GTTCGATGGTGTGCTGTGTCAAATTCTGAGGAAGAAAAATGTTTAAGGTGGCAGAACGAGATGAGAAAAGTGGGT.........GGCCCGCCGCTCAGTTGTGTCAAGAAATCCTCCACCCGCCAGTGCATCCAGGCCATTGTGACAAACAGAGCTGATGCCATGACTCTTGATGGTGGCACTATGTTCGATGCAGGAAAGCCCCCCTACAAACTGCGACCTGTGGCAGCTGAAGTCTACGGGACCAAAGAGCAGCCCCGGACTCACTACTATGCGGTAGCAGTCGTGAAGAACAGCAGTAACTTTCATCTGAACCAACTCCAAGGCCTGAGGTCCTGCCACACCGGCATTGGCAGGAGTGCGGGGTGGAAAATCCCTATAGGG------ACACTTCGTCCATACCTGAATTGGAATGGG---CCACCTGCATCCCTTGAGGAAGCGGTATCCAAGTTCTTCTCAAAGAGCTGTGTTCCCGGTGCCCAAAAG...GATAGATTCCCCAACCTGTGTAGCTCGTGTGCAGGGACAGGAGCCAACAAA------TGTGCCTCTTCCCCCGAGGAGCCATACTCAGGTTATGCTGGAGCCTTGAGGTGTCTGAGAGACAATGCTGGAGATGTGGCTTTTACCAGAGGAAGCACGGTATTTGAGGAGTTACCAAATAAAGCCGAAAGG........................GACCAGTACAAGCTGCTCTGCCCAGACAACACCTGGAAGCCGGTGACAGAATACAAGGAGTGCCACCTGGCCCAAGTCCCTTCACATGCTGTCGTATCCCGAAGC...ACGAATGACAAAGAAGAGGCCATCTGGGAGCTTCTCCGCCAGTCACAGGAGAAGTTTGGAAAAAAACAAGCATCGGGATTCCAGCTCTTTGCCTCCCCCTCGGGACAG...---------AAGGACCTGCTGTTCAAGGAGTCTGCCATTGGCTTTGTGAGGGTTCCCCAGAAGGTAGATGTAGGGCTCTACCTGACCTTCAGCTACACCACATCCATACAGAACCTGAATAAA
TRFE_CHICK/26-352 ATCAGATGGTGCACCATATCCTCTCCAGAAGAGAAGAAATGCAACAACCTCAGGGACCTCACACAACAAGAGAGG.........---ATTTCATTGACCTGTGTGCAGAAAGCAACGTACCTTGACTGCATTAAAGCCATTGCGAACAACGAGGCAGATGCCATTAGCTTGGACGGCGGTCAAGCGTTTGAGGCAGGCCTTGCCCCATACAAGCTGAAGCCCATTGCTGCTGAGGTTTATGAACATACTGAAGGCTCCACAACCAGCTACTATGCTGTGGCCGTTGTGAAAAAAGGAACCGAATTCACCGTGAACGACTTGCAGGGCAAGACCTCCTGCCACACGGGGCTGGGCAGGTCTGCGGGCTGGAACATCCCCATTGGGACACTCCTCCACCGGGGGGCCATTGAGTGGGAAGGCATAGAATCGGGCTCAGTGGAACAAGCGGTGGCCAAGTTTTTCTCTGCCAGCTGCGTGCCCGGTGCCACC---...---ATCGAGCAAAAACTGTGCCGTCAGTGCAAAGGAGAC------CCCAAA------ACCAAGTGTGCCCGCAATGCACCCTATTCTGGATATTCTGGAGCTTTCCATTGTTTGAAAGACGGAAAAGGAGACGTGGCTTTTGTGAAGCACACAACTGTTAATGAAAATGCCCCGGATCAG------AAG........................GATGAGTACGAGCTGCTGTGCCTAGATGGCAGCCGGCAGCCTGTGGACAACTACAAGACCTGTAACTGGGCCAGAGTGGCTGCTCACGCCGTCGTGGCTCGGGAT...GACAAC---AAGGTTGAAGATATCTGGAGCTTCCTCTCGAAAGCACAGAGTGACTTTGGCGTGGACACCAAGAGTGACTTCCACCTCTTTGGGCCACCTGGAAAGAAGgacCCGGTCCTCAAAGACTTGCTTTTCAAAGACTCTGCCATAATGCTGAAGCGCGTCCCCTCGCTGATGGATTCCCAGCTCTACCTGGGCTTTGAGTACTACAGTGCCATCCAGAGCATGCGGAAA
TRF1_SALSA/25-329 GTTAAATGGTGCGTAAAGTCGGAGCAAGAGCTGCGGAAATGCCACGACCTCGCAGCCAAGGTGGCG---------.........------GAGTTTTCATGTGTGCGGAAGGACGGCTCTTTTGAATGCATCCAAGCCATCAAGGGGGGTGAGGCTGATGCTATCACTCTGGATGGAGGAGATATTTACACAGCTGGCCTCACCAACTACGGCCTGCAGCCCATCATTGCAGAGGACTATGGT------GAGGACTCTGACACCTGCTATTATGCTGTGGCCGTGGCCAAGAAGGGCACTGCCTTTGGGTTCAAAACCCTCCGTGGCAAGAAGTCCTGCCACACCGGGTTGGGCAAATCTGCAGGCTGGAACATTCCCATCGGTACCCTGGTGACTGAGAGCCAGATCCGATGGGCCGGCATCGAGGACAGACCTGTGGAGTCGGCGGTGAGCGACTTCTTCAATGCCAGCTGTGCTCCAGGAGCCACTATG...GGG------TCCAAACTGTGCCAGCTTTGTAAGGGA------------GAC------TGCTCCAGGTCTCACAAGGAGCCCTACTATGACTATGCCGGGGCCTTCCAGTGCCTGAAAGATGGAGCTGGAGATGTTGCCTTCATCAAGCCCCTGGCTGTACCTGCCGCAGAGAAGGCAAGC---------........................------TATGAGTTGCTGTGCAAGGATGGCACCAGAGCTTCCATCGACAGCTACAAGACCTGCCACCTGGCCAGAGTACCCGCCCACGCTGTGGTCAGCCGC---...AAGGACCCCGAA------CTGGCCAATCGCATCTACAACAAACTGGTGGCC------------------GTCAAGGACTTCAATCTGTTCTCCTCTGATGGT------...TATGCAGCCAAGAACCTGATGTTCAAGGACTCCGCTCAGAAACTAGTACAGCTGCCAACAACCACCGACTCCTTCCTCTACCTGGGAGCTGAGTACATGAGCACTATCCGCTCCCTGAAAAAA