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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00391 phylogeny
for nucleotide alignment


 
((((((((((((((PPSA_METJA/360-447,((PPSA_METJA/788-860,Q9Y8I9_METMP/339-427),(((O26560_METTH/11-101,PPSA_METTH/372-460),PPSA_AERPE/410-499),PPSA_ARCFU/346-434))),(PPSA_PYRFU/390-478,(PPSA_PYRHO/392-480,PPSA_PYRAB/389-477))),PPSA_STAMA/393-483),(KPYK2_SYNY3/484-578,(KPYK_LACDE/490-579,(KPYK_BACPY/487-576,(KPYK_BACST/488-577,(KPYK_BACLI/486-575,(KPYK_BACSU/487-575,O66010_BACSU/486-574))))))),((PPSA_DEIRA/359-448,PPSA_ECOLI/368-459),(((PPSA_HELPY/376-469,PPSA_HELPJ/376-469),PPSA_SYNY3/388-481),PPSA_AQUAE/381-472))),((Q9YG73_AERPE/125-213,O34796_BACSU/735-823),(((O34309_BACSU/774-861,O69265_BACSU/775-855),Q22649_CAEEL/1120-1205),Q9RZI1_DEIRA/320-397))),(((O85840_SPHAR/416-517,PODK_RHIME/415-516),((Q9RI40_STRCO/398-500,Q9WXH8_9ACTO/395-497),((PODK_TREPA/383-483,((Q27662_GIALA/411-512,PODK_GIALA/411-512),((O76283_9TRYP/430-529,(O23404_ARATH/473-574,((PODK_MESCR/479-580,(((O24612_ORYSA/476-577,(PODK_MAIZE/476-577,Q9SNY6_SACOF/476-577)),O82032_ORYSA/416-517),(O23927_9POAL/474-575,O23928_9POAL/411-512))),((PODK_FLATR/482-583,PODK_FLABI/482-583),(PODK_FLABR/484-585,PODK_FLAPR/485-586))))),PODK_CLOSY/401-502))),(((Q24801_ENTHI/402-502,PODK_ENTHI/402-502),PODK_RICPR/408-508),Q9WYA9_THEMA/407-508)))),(O05566_MYCLE/424-513,O06579_MYCTU/363-458))),((PT1_BORBU/142-226,(((Q9RGC5_MYCHY/147-227,(PT1_MYCCA/145-226,(((PT1_ECOLI/144-225,PT1_SALTY/144-225),PT1_HAEIN/144-225),PT1_BUCAI/144-225))),((PT1_STAAU/146-227,PT1_STACA/146-227),((PT1_LACSK/145-226,(((PT1_BACME/145-226,PT1_BACSU/144-225),(PT1_BACST/150-231,PT1_BACSI/150-231)),PT1_LISMO/145-226)),(((PT1_STRMU/146-227,PT1_STRBO/146-227),PT1_STRSL/146-227),PT1_LACLC/146-227)))),(PT1_MYCGE/145-226,PT1_MYCPN/145-226))),(PT1_CHLTR/155-246,PT1_CHLPN/151-242))),DHAM_ECOLI/375-467),(PT1_ALCEU/147-237,(PTF1_RHOCA/412-493,PTF1_XANCP/413-496))),(PT1A_ECOLI/255-337,FRYA_ECOLI/243-334)),PT1P_ECOLI/312-391),Q9RNG5_LEGPN/330-407),O87685_AZOVI/318-399,Q9X4P3_PSEAE/318-399);
((((((((((((((PPSA_METJA/360-447:0.38091,((PPSA_METJA/788-860:0.46274,Q9Y8I9_METMP/339-427:0.17332):0.12014,(((O26560_METTH/11-101:0.50954,PPSA_METTH/372-460:0.19379):0.07034,PPSA_AERPE/410-499:0.27493):0.13785,PPSA_ARCFU/346-434:0.10057):0.13863):0.03724):0.03843,(PPSA_PYRFU/390-478:0.06067,(PPSA_PYRHO/392-480:0.06149,PPSA_PYRAB/389-477:0.07968):0.04819):0.11470):0.12319,PPSA_STAMA/393-483:0.24153):0.09818,(KPYK2_SYNY3/484-578:0.44345,(KPYK_LACDE/490-579:0.34979,(KPYK_BACPY/487-576:0.26485,(KPYK_BACST/488-577:0.18241,(KPYK_BACLI/486-575:0.19704,(KPYK_BACSU/487-575:0.00866,O66010_BACSU/486-574:0.00662):0.18251):0.11069):0.10418):0.08642):0.13635):0.15148):0.08388,((PPSA_DEIRA/359-448:0.28326,PPSA_ECOLI/368-459:0.18340):0.04452,(((PPSA_HELPY/376-469:0.03026,PPSA_HELPJ/376-469:0.00306):0.38506,PPSA_SYNY3/388-481:0.27022):0.09476,PPSA_AQUAE/381-472:0.23216):0.07003):0.10514):0.03740,((Q9YG73_AERPE/125-213:0.39345,O34796_BACSU/735-823:0.34495):0.11829,(((O34309_BACSU/774-861:0.00000,O69265_BACSU/775-855:0.00828):0.22266,Q22649_CAEEL/1120-1205:0.58028):0.14633,Q9RZI1_DEIRA/320-397:0.51955):0.10530):0.11320):0.16161,(((O85840_SPHAR/416-517:0.26955,PODK_RHIME/415-516:0.19644):0.04821,((Q9RI40_STRCO/398-500:0.22189,Q9WXH8_9ACTO/395-497:0.11620):0.15597,((PODK_TREPA/383-483:0.69957,((Q27662_GIALA/411-512:0.00000,PODK_GIALA/411-512:0.00000):0.26982,((O76283_9TRYP/430-529:0.26422,(O23404_ARATH/473-574:0.21013,((PODK_MESCR/479-580:0.10033,(((O24612_ORYSA/476-577:0.07570,(PODK_MAIZE/476-577:0.09363,Q9SNY6_SACOF/476-577:0.02319):0.07506):0.04772,O82032_ORYSA/416-517:0.09546):0.04567,(O23927_9POAL/474-575:0.02631,O23928_9POAL/411-512:0.02282):0.10984):0.06371):0.07039,((PODK_FLATR/482-583:0.00000,PODK_FLABI/482-583:0.00343):0.04409,(PODK_FLABR/484-585:0.00000,PODK_FLAPR/485-586:0.02071):0.02006):0.08147):0.06243):0.20401):0.06809,PODK_CLOSY/401-502:0.23430):0.08944):0.02776):0.09649,(((Q24801_ENTHI/402-502:0.00000,PODK_ENTHI/402-502:0.00000):0.28457,PODK_RICPR/408-508:0.29373):0.17940,Q9WYA9_THEMA/407-508:0.22351):0.15563):0.09465):0.05237):0.19216,(O05566_MYCLE/424-513:0.16180,O06579_MYCTU/363-458:0.19128):0.29915):0.15249):0.13152,((PT1_BORBU/142-226:0.32038,(((Q9RGC5_MYCHY/147-227:0.24927,(PT1_MYCCA/145-226:0.15881,(((PT1_ECOLI/144-225:0.07719,PT1_SALTY/144-225:0.05661):0.29968,PT1_HAEIN/144-225:0.12661):0.14727,PT1_BUCAI/144-225:0.16384):0.11909):0.04981):0.07584,((PT1_STAAU/146-227:0.11685,PT1_STACA/146-227:0.09751):0.10226,((PT1_LACSK/145-226:0.18713,(((PT1_BACME/145-226:0.12029,PT1_BACSU/144-225:0.16990):0.04599,(PT1_BACST/150-231:0.00919,PT1_BACSI/150-231:0.00308):0.27102):0.09603,PT1_LISMO/145-226:0.19101):0.05454):0.05229,(((PT1_STRMU/146-227:0.13615,PT1_STRBO/146-227:0.12371):0.05323,PT1_STRSL/146-227:0.08213):0.06768,PT1_LACLC/146-227:0.13990):0.09440):0.04194):0.04907):0.04897,(PT1_MYCGE/145-226:0.11601,PT1_MYCPN/145-226:0.21487):0.18307):0.17361):0.11665,(PT1_CHLTR/155-246:0.22406,PT1_CHLPN/151-242:0.24123):0.36608):0.29650):0.06888,DHAM_ECOLI/375-467:0.78868):0.09619,(PT1_ALCEU/147-237:0.42157,(PTF1_RHOCA/412-493:0.27919,PTF1_XANCP/413-496:0.22335):0.21019):0.09665):0.12664,(PT1A_ECOLI/255-337:0.27182,FRYA_ECOLI/243-334:0.51504):0.17643):0.26379,PT1P_ECOLI/312-391:0.23051):0.11436,Q9RNG5_LEGPN/330-407:0.56672):0.19379,O87685_AZOVI/318-399:0.10498,Q9X4P3_PSEAE/318-399:0.10346);