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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00391 phylogeny
for amino acid alignment


 
(((((((((((((PT1_LACSK/145-226,(PT1_LACLC/146-227,(PT1_STRSL/146-227,(PT1_STRMU/146-227,PT1_STRBO/146-227)))),PT1_ALCEU/147-237),(PT1_STAAU/146-227,PT1_STACA/146-227)),(((PT1_BACME/145-226,PT1_BACSU/144-225),(PT1_BACST/150-231,PT1_BACSI/150-231)),PT1_LISMO/145-226)),((PT1_BUCAI/144-225,(PT1_HAEIN/144-225,(PT1_ECOLI/144-225,PT1_SALTY/144-225))),((PT1_MYCGE/145-226,PT1_MYCPN/145-226),(PT1_MYCCA/145-226,Q9RGC5_MYCHY/147-227)))),(PT1_CHLTR/155-246,PT1_CHLPN/151-242)),PT1_BORBU/142-226),(((Q9WYA9_THEMA/407-508,(((((PODK_RICPR/408-508,PODK_RHIME/415-516),(Q24801_ENTHI/402-502,PODK_ENTHI/402-502)),(O85840_SPHAR/416-517,PODK_TREPA/383-483)),((Q27662_GIALA/411-512,PODK_GIALA/411-512),(O76283_9TRYP/430-529,(PODK_CLOSY/401-502,(O23404_ARATH/473-574,((O23927_9POAL/474-575,O23928_9POAL/411-512),((PODK_FLAPR/485-586,(PODK_FLABR/484-585,(PODK_FLATR/482-583,PODK_FLABI/482-583))),(((PODK_MESCR/479-580,O82032_ORYSA/416-517),(PODK_MAIZE/476-577,Q9SNY6_SACOF/476-577)),O24612_ORYSA/476-577)))))))),(Q9RI40_STRCO/398-500,Q9WXH8_9ACTO/395-497))),(O05566_MYCLE/424-513,O06579_MYCTU/363-458)),(((PPSA_AERPE/410-499,(PPSA_STAMA/393-483,(PPSA_AQUAE/381-472,((PPSA_DEIRA/359-448,PPSA_ECOLI/368-459),((PPSA_HELPY/376-469,PPSA_HELPJ/376-469),PPSA_SYNY3/388-481))))),((((PPSA_METJA/360-447,(PPSA_PYRFU/390-478,(PPSA_PYRHO/392-480,PPSA_PYRAB/389-477))),PPSA_ARCFU/346-434),(((PPSA_METTH/372-460,O26560_METTH/11-101),Q9Y8I9_METMP/339-427),(KPYK2_SYNY3/484-578,(KPYK_LACDE/490-579,(KPYK_BACPY/487-576,(KPYK_BACST/488-577,(KPYK_BACLI/486-575,(KPYK_BACSU/487-575,O66010_BACSU/486-574)))))))),PPSA_METJA/788-860)),((Q9RZI1_DEIRA/320-397,O34796_BACSU/735-823),(((O34309_BACSU/774-861,O69265_BACSU/775-855),Q22649_CAEEL/1120-1205),Q9YG73_AERPE/125-213))))),(DHAM_ECOLI/375-467,(PTF1_RHOCA/412-493,PTF1_XANCP/413-496))),(PT1A_ECOLI/255-337,FRYA_ECOLI/243-334)),PT1P_ECOLI/312-391),Q9RNG5_LEGPN/330-407),O87685_AZOVI/318-399,Q9X4P3_PSEAE/318-399);
(((((((((((((PT1_LACSK/145-226:0.12510,(PT1_LACLC/146-227:0.08164,(PT1_STRSL/146-227:0.02570,(PT1_STRMU/146-227:0.07542,PT1_STRBO/146-227:0.04174):0.06714):0.09337):0.15517):0.04054,PT1_ALCEU/147-237:0.86711):0.03044,(PT1_STAAU/146-227:0.03358,PT1_STACA/146-227:0.12853):0.15486):0.03642,(((PT1_BACME/145-226:0.07825,PT1_BACSU/144-225:0.15417):0.06474,(PT1_BACST/150-231:0.00000,PT1_BACSI/150-231:0.00000):0.04382):0.04094,PT1_LISMO/145-226:0.15277):0.09024):0.08046,((PT1_BUCAI/144-225:0.15254,(PT1_HAEIN/144-225:0.20520,(PT1_ECOLI/144-225:0.03389,PT1_SALTY/144-225:0.02799):0.06846):0.10683):0.24697,((PT1_MYCGE/145-226:0.15926,PT1_MYCPN/145-226:0.09006):0.26976,(PT1_MYCCA/145-226:0.15650,Q9RGC5_MYCHY/147-227:0.28363):0.05653):0.11306):0.08251):0.21149,(PT1_CHLTR/155-246:0.23026,PT1_CHLPN/151-242:0.09768):0.72417):0.15789,PT1_BORBU/142-226:0.52900):0.11307,(((Q9WYA9_THEMA/407-508:0.15241,(((((PODK_RICPR/408-508:0.33967,PODK_RHIME/415-516:0.22278):0.10332,(Q24801_ENTHI/402-502:0.00000,PODK_ENTHI/402-502:0.00000):0.29121):0.09241,(O85840_SPHAR/416-517:0.24434,PODK_TREPA/383-483:0.98088):0.02345):0.06842,((Q27662_GIALA/411-512:0.00000,PODK_GIALA/411-512:0.00000):0.38006,(O76283_9TRYP/430-529:0.28106,(PODK_CLOSY/401-502:0.17691,(O23404_ARATH/473-574:0.11181,((O23927_9POAL/474-575:0.01987,O23928_9POAL/411-512:0.01239):0.04248,((PODK_FLAPR/485-586:0.00000,(PODK_FLABR/484-585:0.00000,(PODK_FLATR/482-583:0.00000,PODK_FLABI/482-583:0.00000):0.03212):0.01055):0.07333,(((PODK_MESCR/479-580:0.15352,O82032_ORYSA/416-517:0.04979):0.01971,(PODK_MAIZE/476-577:0.07664,Q9SNY6_SACOF/476-577:0.04173):0.05993):0.00000,O24612_ORYSA/476-577:0.09884):0.06121):0.01942):0.06333):0.20488):0.05129):0.06700):0.09881):0.14953,(Q9RI40_STRCO/398-500:0.30462,Q9WXH8_9ACTO/395-497:0.06437):0.21630):0.08088):0.24374,(O05566_MYCLE/424-513:0.15098,O06579_MYCTU/363-458:0.22669):0.52199):0.23317,(((PPSA_AERPE/410-499:0.25385,(PPSA_STAMA/393-483:0.14809,(PPSA_AQUAE/381-472:0.05349,((PPSA_DEIRA/359-448:0.26653,PPSA_ECOLI/368-459:0.18241):0.09171,((PPSA_HELPY/376-469:0.00000,PPSA_HELPJ/376-469:0.00000):0.31844,PPSA_SYNY3/388-481:0.25973):0.19336):0.12576):0.25220):0.11782):0.03801,((((PPSA_METJA/360-447:0.49457,(PPSA_PYRFU/390-478:0.00000,(PPSA_PYRHO/392-480:0.01113,PPSA_PYRAB/389-477:0.00000):0.04618):0.12883):0.07024,PPSA_ARCFU/346-434:0.06658):0.03153,(((PPSA_METTH/372-460:0.18897,O26560_METTH/11-101:0.80033):0.05584,Q9Y8I9_METMP/339-427:0.19887):0.05824,(KPYK2_SYNY3/484-578:0.55644,(KPYK_LACDE/490-579:0.31909,(KPYK_BACPY/487-576:0.27502,(KPYK_BACST/488-577:0.14134,(KPYK_BACLI/486-575:0.14653,(KPYK_BACSU/487-575:0.00000,O66010_BACSU/486-574:0.01099):0.10872):0.13504):0.04383):0.09435):0.17810):0.34752):0.08387):0.02239,PPSA_METJA/788-860:0.65647):0.10894):0.00000,((Q9RZI1_DEIRA/320-397:0.75393,O34796_BACSU/735-823:0.27717):0.19623,(((O34309_BACSU/774-861:0.00000,O69265_BACSU/775-855:0.02548):0.32415,Q22649_CAEEL/1120-1205:0.74927):0.41816,Q9YG73_AERPE/125-213:0.27924):0.09580):0.17189):0.33960):0.51437):0.20965,(DHAM_ECOLI/375-467:1.09858,(PTF1_RHOCA/412-493:0.40190,PTF1_XANCP/413-496:0.31344):0.11956):0.16201):0.43176,(PT1A_ECOLI/255-337:0.34161,FRYA_ECOLI/243-334:0.73175):0.31446):0.52854,PT1P_ECOLI/312-391:0.25583):0.27884,Q9RNG5_LEGPN/330-407:0.38989):0.28445,O87685_AZOVI/318-399:0.12895,Q9X4P3_PSEAE/318-399:0.09186);