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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00352 - TBP)
Transcription factor TFIID (or TATA-binding protein, TBP)
(Pfam reference: accession no. PF00352)
(Interpro reference: accession no. IPR000814)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
56 sequences @ 106 aa
(ave. pairwise identity: 0.37)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 26.25)
nucleotides
(available for above)
54 sequences @ 318 bp
(ave. pairwise identity: 0.45)
New Hampshire format
(total tree length: 21.70)
amino acids, restricted set
(corresp. to available nt seqs)
54 sequences @ 106 aa
(ave. pairwise identity: 0.36)
New Hampshire format
(total tree length: 25.78)