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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00317 phylogeny
for restricted amino acid alignment


 
(((((((((((((((RIR1_ARATH/141-213,(((RIR1_CAEEL/147-219,RIR1_VACCC/141-213),(RIR1_PLAF4/139-211,RIR1_CRYPV/139-211)),(O41269_NPVSL/140-212,RIR1_DROME/152-224))),(((RIR1_NEUCR/141-213,RIR3_YEAST/141-213),RIR1_SCHPO/141-213),(RIR1_TRYBB/146-223,O41111_CHVP1/155-227))),(O12935_9NUCL/138-210,Q65357_NPVMB/132-204)),(RIR1_ASFB7/111-188,Q9QAL9_WSSV/157-236)),Q9L3F5_STRCO/143-221),((Q9I4I1_PSEAE/293-368,RIR1_CHLPN/375-451),Q9HMU3_HALN1/138-216)),(((Q9K940_BACHD/108-182,((((((Q99CY1_BHV4/104-203,(Q9J2J1_9GAMA/117-213,P88952_HHV8/115-211)),RIR1_SHV21/87-187),((O36411_9GAMA/88-188,Q66663_9GAMA/103-203),O41962_MHV68/96-191)),(RIR1_EBV/90-182,Q993F4_9GAMA/95-187)),(Q9DWE5_RCMVM/394-483,RIR1_HHV7J/141-226)),(((((Q9E1Z6_9ALPH/124-215,RIR1_VZVD/120-211),(Q89942_MEHV1/170-258,Q9WSX4_9ALPH/147-235)),((O72889_FHV1/131-218,RIR1_PRVKA/187-273),(O39263_9ALPH/129-218,RIR1_BHV1C/131-220))),Q9QH53_9ALPH/129-219),(RIR1_HHV23/497-584,Q99BK3_9ALPH/138-224)))),((Q99VP2_STAAM/108-182,((RIR1_BACSU/90-164,O64173_BPSPC/89-163),Q9RZL7_DEIRA/90-163)),(((Q99Z63_STRPY/92-166,Q97QM4_STRPN/92-166),Q9CGW7_LACLA/92-166),(((O69273_CORAM/103-177,RIR3_ECOLI/97-171),((Q9XC22_MYCGA/91-165,Q98Q28_MYCPU/91-165),RIR1_MYCPN/96-170)),Q9A175_STRPY/90-164)))),Q9RRW1_DEIRA/78-151)),((Q9UYA0_PYRAB/113-268,((Q97CL0_THEVO/111-247,Q97ZH9_SULSO/114-198),((((O28609_ARCFU/1-81,O33839_THEMA/13-102),O53767_MYCTU/107-188),O26748_METTH/2-82),Q9HPG8_HALN1/26-171))),Q9YA77_AERPE/72-143)),(O55716_IRV6/12-79,(Q9ZD34_RICPR/19-85,Q9A2R4_CAUCR/36-102))),(Q9PJ87_CAMJE/134-210,RIR1_HELPJ/135-211)),(RIR1_AQUAE/152-230,(Q97E39_CLOAB/134-212,((Q9KFH8_BACHD/120-198,Q9PE32_XYLFA/208-292),RIR1_TREPA/237-314)))),RIR1_SYNY3/167-239),RIR1_BPT4/139-217),Q9JZ50_NEIMB/143-222),RIR1_SALTY/141-220,RIR1_BUCAI/141-220);
(((((((((((((((RIR1_ARATH/141-213:0.14329,(((RIR1_CAEEL/147-219:0.14681,RIR1_VACCC/141-213:0.12126):0.03285,(RIR1_PLAF4/139-211:0.05753,RIR1_CRYPV/139-211:0.15969):0.12717):0.02209,(O41269_NPVSL/140-212:0.20609,RIR1_DROME/152-224:0.12613):0.04531):0.03564):0.00000,(((RIR1_NEUCR/141-213:0.13571,RIR3_YEAST/141-213:0.16662):0.04543,RIR1_SCHPO/141-213:0.09332):0.03994,(RIR1_TRYBB/146-223:0.25966,O41111_CHVP1/155-227:0.44462):0.16181):0.01718):0.05872,(O12935_9NUCL/138-210:0.22482,Q65357_NPVMB/132-204:0.44443):0.07335):0.04336,(RIR1_ASFB7/111-188:0.51517,Q9QAL9_WSSV/157-236:0.24852):0.15789):0.52190,Q9L3F5_STRCO/143-221:0.39864):0.27905,((Q9I4I1_PSEAE/293-368:0.30294,RIR1_CHLPN/375-451:0.31503):0.10329,Q9HMU3_HALN1/138-216:0.52668):0.18145):0.17653,(((Q9K940_BACHD/108-182:1.07694,((((((Q99CY1_BHV4/104-203:0.33820,(Q9J2J1_9GAMA/117-213:0.17404,P88952_HHV8/115-211:0.29249):0.20703):0.15394,RIR1_SHV21/87-187:0.43188):0.05120,((O36411_9GAMA/88-188:0.31815,Q66663_9GAMA/103-203:0.42876):0.11206,O41962_MHV68/96-191:0.26626):0.14315):0.22009,(RIR1_EBV/90-182:0.36550,Q993F4_9GAMA/95-187:0.33396):0.21244):0.26977,(Q9DWE5_RCMVM/394-483:0.92658,RIR1_HHV7J/141-226:1.32331):0.39036):0.32086,(((((Q9E1Z6_9ALPH/124-215:0.24224,RIR1_VZVD/120-211:0.16001):0.23235,(Q89942_MEHV1/170-258:0.20292,Q9WSX4_9ALPH/147-235:0.06201):0.29951):0.10737,((O72889_FHV1/131-218:0.37995,RIR1_PRVKA/187-273:0.35225):0.08673,(O39263_9ALPH/129-218:0.35054,RIR1_BHV1C/131-220:0.17475):0.05421):0.16253):0.09709,Q9QH53_9ALPH/129-219:0.40285):0.46427,(RIR1_HHV23/497-584:0.44575,Q99BK3_9ALPH/138-224:0.18264):0.40730):0.14530):0.71695):0.20006,((Q99VP2_STAAM/108-182:0.34044,((RIR1_BACSU/90-164:0.09177,O64173_BPSPC/89-163:0.11280):0.10403,Q9RZL7_DEIRA/90-163:0.68253):0.05282):0.12436,(((Q99Z63_STRPY/92-166:0.05559,Q97QM4_STRPN/92-166:0.15838):0.13146,Q9CGW7_LACLA/92-166:0.18607):0.04311,(((O69273_CORAM/103-177:0.15284,RIR3_ECOLI/97-171:0.25444):0.14681,((Q9XC22_MYCGA/91-165:0.33415,Q98Q28_MYCPU/91-165:0.14361):0.06162,RIR1_MYCPN/96-170:0.25262):0.13683):0.04296,Q9A175_STRPY/90-164:0.29619):0.17496):0.05323):0.88456):0.19685,Q9RRW1_DEIRA/78-151:1.06814):0.12505):0.00000,((Q9UYA0_PYRAB/113-268:0.84123,((Q97CL0_THEVO/111-247:0.28675,Q97ZH9_SULSO/114-198:0.39612):0.09606,((((O28609_ARCFU/1-81:0.16939,O33839_THEMA/13-102:0.79267):0.10852,O53767_MYCTU/107-188:0.56110):0.08400,O26748_METTH/2-82:0.35330):0.05388,Q9HPG8_HALN1/26-171:0.76125):0.10489):0.05688):0.10863,Q9YA77_AERPE/72-143:0.93079):0.29453):0.03816,(O55716_IRV6/12-79:0.75254,(Q9ZD34_RICPR/19-85:0.22029,Q9A2R4_CAUCR/36-102:0.26240):0.20572):0.40347):0.23976,(Q9PJ87_CAMJE/134-210:0.07073,RIR1_HELPJ/135-211:0.32642):0.16657):0.14353,(RIR1_AQUAE/152-230:0.22808,(Q97E39_CLOAB/134-212:0.20419,((Q9KFH8_BACHD/120-198:0.21781,Q9PE32_XYLFA/208-292:0.36412):0.50814,RIR1_TREPA/237-314:0.33516):0.10523):0.13325):0.12896):0.34008,RIR1_SYNY3/167-239:0.64589):0.37319,RIR1_BPT4/139-217:0.17910):0.35567,Q9JZ50_NEIMB/143-222:0.06330):0.07378,RIR1_SALTY/141-220:0.02293,RIR1_BUCAI/141-220:0.18701);