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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00317 alignment
(82 sequences with 176 aa)


RIR1_HHV7J/141-226 FSPGVLAASRFLDEISNSF---.----NGIEEN.IPTIFLRISVTLASQ-IKKIEYLQKSFVSH--...........................................................---.---............KCPLVEEILILLYKRVCMLPFPCMSNLGLVSE
Q9DWE5_RCMVM/394-483 LDRGLYSVVAMMDRYANVL---.----EGREEL.PVCVAARVAAAIAVDCDTFGGGCEAVFSARPR...........................................................---.---...........gALEVFEAVLSALCSFAVVLPPQVMAHAGLRGG
Q99BK3_9ALPH/138-224 AERGFQSALKLEEFYLKRLP--.----GDYKES.VIQLYTRIAGHLACRSEGMCRVALGREGS---...........................................................---.---............WMDMFEYFFNNLYSHAIVPATPAMLNLGTTGC
RIR1_HHV23/497-584 VERGLQSALKYEEFYLKRFG--.----GHYMES.VFQMYTRIAGFLACRATRGMRHIALGRQ----...........................................................---.---..........gsWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNY
Q9QH53_9ALPH/129-219 ARVGLQSAQKYESLYLGKLG--.----NGKLES.MGQFFTRLSAEAARGAFNIPQFAQALEVDGQV...........................................................---.---...........tPADVFTRFFTCLSSQLIVPPTPVMLFGGTSLA
RIR1_PRVKA/187-273 YARGLQSALKYEEMYLARLE--.----HGRCEA.MDQFFVRLAAAAATATRRPMALVLCGSDA---...........................................................---.---............WPEVFDAYFRALATQAIVPATPLMLFAGRARG
RIR1_BHV1C/131-220 RALGLQSALKYEEMYLAKLE--.----GGAIES.MGQFFVRIAATAATWTMREPAFGRALVGEG--...........................................................---.---..........atWCAVFNAYLTALYRQLVVPATPIMLFAGRARG
O39263_9ALPH/129-218 CSLGLQSALKYEEMYLAKMR--.----GGRLES.MGQFFLRLATTATHYTMEQPAMARVLVSGE--...........................................................---.---..........vgWTYIFRAFFTALAGQVVIPATPIMLFGGRDCG
O72889_FHV1/131-218 CELGLQSALKYEEMYLANLE--.----NGALES.MGQFFLRLAATAATASTPEMRQALNAKLPT--...........................................................---.---............WFRVFKSFFFYLSRQLMIPATPIMLFGGRTKG
Q9WSX4_9ALPH/147-235 KRLGLQSALKYEE-YLTELE--.----DGKKES.LCQFFVRLAAAAATEASNKKAFMSALG-----...........................................................---.---.......tevstWETAFTAFFFALARQIFVPSTPCMLFLGREGT
Q89942_MEHV1/170-258 KRLGLQSALKYEE-YLVELE--.----GGKKES.LCQFFIRLAAAAATEALHRKPLIASLT-----...........................................................---.---.......ngsanWRTAFTSFFLALAHQLFVPSTPCMLFLGREGY
RIR1_VZVD/120-211 ATLGLQSALKYEDFYLTKLE--.----EGKLES.LCQFFLRLAATVTTEIVNLPKIATLIPGINDG...........................................................---.---..........ytWTDVCRVFFTALACQKIVPATPVMMFLGRETG
Q9E1Z6_9ALPH/124-215 TSLGLQSALKYEEFYLTKLE--.----DNKIES.LEQFFIRLATAVTIEVMKIPNIAYLIPGTYSA...........................................................---.---..........ytWTDMCSVFFNMLSRQLIIPATPVMMFLGRETG
Q993F4_9GAMA/95-187 LGRGYLSALRYYDTYLNVTT--.----DGVYES.IPHAYMRVAAFCASITLHFEGMRLAMKAMCPH...........................................................---.---.........lsdILSIFDYFFEHLTLQTVCCSTPILRSAGIRKQ
RIR1_EBV/90-182 VSSGYLSALRYYDTYLYVGR--.----SGKQES.VQHFYMRLAGFCASTTCLYAGLRAALQRARPE...........................................................---.---.........iesDMEVFDYYFEHLTSQTVCCSTPFMRFAGVENS
Q66663_9GAMA/103-203 ISRGMLSAKRMYDTYVLRTEEGgG--EGAVYES.ALQMYARMAAFFTCQCFAYPSLRKTVSEVEGG...........................................................---.---......sgrmesGLDFFAYFFKILASQLVSCATPVMRSAGLRQS
O41962_MHV68/96-191 KENGYLAAARFYDTYVLRN---.----DVKYES.VPHMFMRISAFCAYHCIQNECLFKTLKHMELD...........................................................---.---.....rgnvvenAMDLITYFFEMIASQQVCCATPVMRSAGLRDA
O36411_9GAMA/88-188 KSRGILSAKRFYDTYVLRTAD-.----GSCYES.VSHCFMRIAAFCTVQVLTNSALKITILYLGRDk...................................lf.....................---.---.....kdlpcspTMDLFIYFFSPLSHQLVCCATPIMRSAGLRDA
P88952_HHV8/115-211 LNCGYLSAVRLYDTYVLRT-MG.---TEPVYES.VAQMFMRVSVFVACQCLEHECLYWLARDLIED...........................................................---.---.......aksvsEMAIVEYVFGYLAAQHVCCATPILRSAGVEGG
Q9J2J1_9GAMA/117-213 VNCGYLSAVRFYDTYVLRT-QG.---SSPIFES.VAQMFMRVAVFVACQCIKFPCLRETLRHLVES...........................................................---.---.......eteldEMYLVGYAFHYISSQIVCCATPVLRSAGLRGG
RIR1_SHV21/87-187 RNCGILPAKRFYDTYVLPPRTE.---MNGKYES.IPHFFARIAAYCAWNCIMCEPLKDTLVYVQKR.....................................d.....................---.---.....wnveiktDMQIFKYFYKVISSQLVCCATPVMRSAGVAGE
Q99CY1_BHV4/104-203 LNCGILAAKRFYDTYLLRTP-G.---PNPIFES.IPHFYTRISVFCAVQCLRFSYLKTTIQATIKK.....................................n.....................---.---.....nnreastDMDIVHYFFGFIASQVVCCATPVLRSAGVESE
Q9RZL7_DEIRA/90-163 RFKAFMGAYKFYSEYAGMTPDR.----SRWLER.YEDRLSITALARSER-----------------...........................................................---.---............-VDEALELVHHLVNQTFTPATPTLMNSGKANT
Q9XC22_MYCGA/91-165 EFPSFMGAFKFYNSYCLKSNDG.----KEFYET.YSERCLMNALFLGGK-----------------...........................................................---.---............NFQNVKNILIEILSGRFQPATPTFLNAGKKQR
Q9A175_STRPY/90-164 RFLNLMGAMKFYQSYALKTLDG.----KQYLET.FEDRAVMNALFLADG-----------------...........................................................---.---............DQTFVFDVIDAILHRRFQPATPTFLNAGKKRR
Q98Q28_MYCPU/91-165 FFPSFMGILKFYNAYALKSFDG.----KEYLEN.FEDRALMNALFLANG-----------------...........................................................---.---............DFEKAKAILKEIMLKRFQPATPTFLNAGKAQR
RIR1_MYCPN/96-170 RYANFMGAFKFYNAYALKTFDG.----KWYLEN.YEDRVVMNVLFLANG-----------------...........................................................---.---............NYNKALKLLKQIITNRFQPATPTFLNAGRKKR
RIR3_ECOLI/97-171 RFQTFLGAWKFYTSYTLKTFDG.----KRYLED.FADRVTMVALTLAQG-----------------...........................................................---.---............DETLALQLTDEMLSGRFQPATPTFLNCGKQQR
O69273_CORAM/103-177 RFKSFLGAYKYYTSYTLKTFDG.----RRYLER.FEDRVSMTALFLADG-----------------...........................................................---.---............DTAVAESMVDEIMSGRFQPATPTFLNAGKAQR
RIR1_MYCLE/105-179 RFSTFLGAFKYYTSYTLKTFDG.----KRYLER.LEDRVCMVALTLAAG-----------------...........................................................---.---............DTGLAEKLVDEIIDGRFQPATPTFLNSGKKQR
Q99VP2_STAAM/108-182 NFASYMSASKFFKDYALKTNDK.----SQYLED.YNQHVAIVALYLANG-----------------...........................................................---.---............NKAQAKQFISAMVEQRYQPATPTFLNAGRARR
O64173_BPSPC/89-163 RFPSFMSAFKFYNDYALKTNDK.----TKILER.YEDRVSIVALYCADG-----------------...........................................................---.---............DYEKAVEEVHTMMKQEYQPATPTFLNAGRKRR
RIR1_BACSU/90-164 RFPSFMSAFKFYNDYALKTNDK.----KKILER.YEDRISIVALFFANG-----------------...........................................................---.---............DTEKAKEYVNLMINQEYQPSTPTFLNAGRKRR
Q9CGW7_LACLA/92-166 HFDSFMAAYKFYNQYAMKNNDG.----SLYLED.FEDRVLMNALYMADG-----------------...........................................................---.---............DEKLANNLAFAMINRRYQPATPTFLNAGRKRR
Q97QM4_STRPN/92-166 QFKSFMAAYKFYNQYALKTNDG.----EYYLEN.MEDRVFFNALYFADG-----------------...........................................................---.---............NEAVAIDIANEIIHQRYQPATPSFLNAGRARR
Q99Z63_STRPY/92-166 RFKSFMAAYKFYQQYALKTNDG.----EHYLEN.LEDRVLFNALYFADG-----------------...........................................................---.---............QEDLAKDLAVEMINQRYQPATPSFLNAGRSRR
Q9RRW1_DEIRA/78-151 QHFDENAQHIAKRQYLQG-NDG.---------D.ISGMFWRIADWVAGAEAPEA------------...........................................................---.---............RQGWAQQYYDLMAEKKFCPGGRVLAGAGTQHG
Q9K940_BACHD/108-182 -EEASTGIITRSLDVIEK----.------PLEIfYEQIAKRNATGLAAVETTE-------------...........................................................---.---..........ekRQQSFERFYEELVNMNFVPAGRVLYGAGAKTD
Q9YA77_AERPE/72-143 FGFTYNAVRVLMARYMVKDEM-.----GRFLET.PSMVMRRVALGFRERVDP--------------...........................................................---.---............-----DRLYRLLVERRFMFNSPTLFNMFVDGA
O33839_THEMA/13-102 VEPSKNAQIILRDRYFMKDLD-.----GNYLETkWEDVARRVARVVATAELLNP-----------Sy....................................k.....................---.---.....knekldrIKEWEDIFFRVLKARLFIPNSPTLFNAGLGVK
Q9HPG8_HALN1/26-171 RLTANAYHNILPARYLRKDTD-.----GEHVES.QEDLFERVAKNIALAEVVFE-----------Sddpvtatpsqlkpdhprr..delaaevfgsdvdpdset..........atveltdsninKFAyDTVvpelddpevrehVEGVAAEFQDLMASLSFMPNSPTLMNAGDELQ
O53767_MYCTU/107-188 LKLSLAAVTVLRERYLLHDEQ-.----GRPAES.TGELMDRSARCVAAAEDQYE----------PG...........................................................---.---...........sSRRWAERFATLLRNLEFLPNSPTLMNSGTDLG
O26748_METTH/2-82 ISLSTTALKVLEERYLLRGE-G.----GEVVET.PEEMFRRVARAVASA-----------------...........................................................---.---.....deaygddPAVAEEAFYSVMGNLEFLPNSPTLMNAGTPIN
O28609_ARCFU/1-81 MKLNRTAETVLRKRYLLKDDE-.----GNVIET.PEEMCWRVARAIAKAEENYG------------...........................................................---.---..........nnAEEWAEKFFKLLWEQKFMPNSPTLMNAGTELN
Q97ZH9_SULSO/114-198 LLLSYNALKVLEARYLLKDPNT.----LRYIET.PQMLFRRVARFLASVERKYG------------...........................................................---.---.......kseaeVKQLEDKFYEMISDLKFVPNSPTLMNSETRLG
Q97CL0_THEVO/111-247 LKLTLNAVKVLEARYLLKDED-.----GKIIET.PRQMFRRVASHIGIIEALYDFMEYKKTGKIPEnaekigkvsltqeevlrrafnymkedgimegtfeefmdf....................---.---.....lstkgtsAHLYINKFEEMMSSLDFVPNSPTLMNAGTKLG
Q9UYA0_PYRAB/113-268 KRFSINALRVLASRYLKRDEN-.----GNIIES.PRELFERVSILAVIPDLLYDERVFDKDGNYKQdlkrveyylenfe............kfdgkysigkyklnkyhfermvnlyrelaekgkmKVSiDEFlsmlerge.fdkYEKEIEEYFKLMTNQVFMPNTPALINSGRPLG
Q9A2R4_CAUCR/36-102 ALLTDFGKTTLEDRYLLPG---.--------ES.YQDMFARVSTAFADD-----------------...........................................................---.---............-ADHAQRVYDYMSRLWFMPATPVLSNGGADRG
Q9ZD34_RICPR/19-85 NLLTPFGKAILRDRYLMKG---.--------ED.FQDLFARVSSHYAEN-----------------...........................................................---.---............-KQHAQKLYEYMSQMWFMPATPILSNGGTERG
O55716_IRV6/12-79 SKFDELGLKRLRESYMMREET-.---------S.PQERFAYV---CKQV-----------------...........................................................---.---..........gtDRDHSQRLYEYTSKHWLSLSTPILSFGKANHG
RIR1_SYNY3/167-239 TDYDYAGAVLLTSRYLLPN---.--------EL.PQEALLTCALLLASVEAPDR------------...........................................................---.---............RLQWARRFYESIAARRISLATPILANLRVPGG
RIR1_TREPA/237-314 KLFTYSSLDMILRRYVIRTRA-.----HVPLET.PQEMFLGIALHLAMNETQD-------------...........................................................---.---............RMQWVKRFYTVLSKLQVTVATPTLSNARKPFH
Q97E39_CLOAB/134-212 FLFTYSGIKLLSERYLIQNFE-.----RKVLEL.PQQMFMGIAMHLAVPEKQ--------------...........................................................---.---..........enRVYWAKRFYDVLSSLKATMATPTMSNARKPFY
RIR1_AQUAE/152-230 LYFTYTGIKILYDRYLVRDEE-.----GRVIEL.PQEMYMLIAMTLAVPEKPEE------------...........................................................---.---............RLKWAKKFYDVLSEHKVTVATPTLMNARRPFT
RIR1_HELPJ/135-211 FQFNYLGIKTLYDRYLLKDAN-.----NHPIEL.PQHMFMSIAMFLAQNEQE--------------...........................................................---.---............LNKIALEFYEVLSKFEAMCATPTLANARTTKH
Q9PJ87_CAMJE/134-210 MQFTYLGIKTLYDRYLIKDSK-.----GMPIEL.PQQMFMAIAMFLAQNEFN--------------...........................................................---.---............PQEWAKKFYDLISKFELMLATPTLSNARTTRH
Q9PE32_XYLFA/208-292 KLFTYNGLYLLATRYLATDAS-.----RGVFEL.PQERWLTIALYLMQDEYGPGKGGR--------...........................................................---.---..........erRMQLVGEAYWALSNLYMTVATPTLGNAGKING
Q9KFH8_BACHD/120-198 ELFTYIGLKTLADRYLARLYD-.----RTLMEL.PQERFMVIAMSLMKKEVN--------------...........................................................---.---..........sqRLSLVKEAYWALSNLYMTVATPTFANAGKAVG
Q9HMU3_HALN1/138-216 DRLDYMAMDTLRQRYFLREPD-.----ADPFEL.PQPFWMRVAMGVALREDPAD------------...........................................................---.---............REEYAIEFYDALSTLRFVHSTPTLFHAGTTHA
RIR1_CHLPN/375-451 QQFSYMGVQNLYDRYFNLHE--.----GRRLET.AQIFWMRVSMGLALNEG---------------...........................................................---.---..........eqKNFWAITFYNLLSTFRYTPATPTLFNSGMRHS
Q9I4I1_PSEAE/293-368 QQFTYLGLQTLYDRYFIHKD--.----GIRFEL.PQIFFMRVAMGLAIE--------------EKD...........................................................---.---............REARAIEFYNLLSSFDYMSSTPTLFNAGTLRP
Q9L3F5_STRCO/143-221 DRFGYFGLRTLYSRYLLRHP--.--ITRKAVET.PQHFLLRVAAGLAEDDT---------------...........................................................---.---..........vrAADEVAALYGLMSRLDYLPSSPTLFNSGTRHA
Q65357_NPVMB/132-204 LDYNYFGYQTLKNGYLIKIN--.----EKVAET.IQHMHMRIALGIFGD-----------------...........................................................---.---............DIDSAIKSYKFLSRKMYTHASPTMFAAGTLTP
O41111_CHVP1/155-227 YDFDYFGFKTMERLYLTKVG--.----DKIVER.PQHVYLRVAIGLWGS-----------------...........................................................---.---............DIAKVKETYDALSCRKFTHASPTLFNSGFKKA
Q9QAL9_WSSV/157-236 YLFTCFGLRTLEYSYLIKIGSPtDRKKRILVER.PQDMIMRVAVGIHGS-----------------...........................................................---.---............DIKSVIETYDLMSRHYFTHASPTLFNCGTVTP
RIR1_TRYBB/146-223 FDFEYFGYKTLERSYLLRVHKGrGV--MEVVER.PQQMFLRVALGIHGE-----------------...........................................................---.---............DLERVKETYDYMSQGFFTHATPTLFNAGTPFP
O12935_9NUCL/138-210 YNYKYFGFKTLTNGYLLKID--.----DVIMER.PQHMLMRVALAIHGD-----------------...........................................................---.---............DVKSVIETYQLMSLGTFTHASPTLFSAGTRRQ
RIR1_CRYPV/139-211 FEYDYFAFKTLERSYLLKID--.----NKVVER.PQHLLMRVSCGIHCG-----------------...........................................................---.---............DIEAALETYELLSQKYFTHATPTLFNSGTPRP
RIR1_PLAF4/139-211 FNYDYFGFKTLERSYLLRIN--.----NKIIER.PQHLLMRVSIGIHID-----------------...........................................................---.---............DIDKALETYHLMSQKYFTHATPTLFNSGTPRP
RIR1_SCHPO/141-213 FTYNFFGFKTLERSYLLRID--.----GKVAER.PQHMIMRVAVGIHGE-----------------...........................................................---.---............DIEAAIETYNLMSQRYFTHASPTLFNAGTPRP
RIR1_DROME/152-224 FGYNYFGFKTLERSYLLKRN--.----GKIAER.PQHMLMRVAIGIHGE-----------------...........................................................---.---............DIDAAVETYNLLSERYFTHASPTLFAAATNRP
RIR1_VACCC/141-213 FSYNYFGFKTLEKSYLLKIN--.----NKIVER.PQHMLMRVAVGIHQW-----------------...........................................................---.---............DIDSAIETYNLLSEKWFTHASPTLFNAGTSRH
RIR1_ARATH/141-213 FEYDYFGFKTLERSYLLKVQ--.----GTVVER.PQHMLMRVAVGIHKD-----------------...........................................................---.---............DIDSVIQTYHLMSQRWFTHASPTLFNAGTPRP
RIR1_CAEEL/147-219 YSYTYFGFKTLERSYLLKIN--.----KEIVER.PQQMLMRVSIGIHGD-----------------...........................................................---.---............DITSAIETYNLMSERYMTHASPTLFNSGTCRP
RIR3_YEAST/141-213 FQYTYFGFKTLERSYLLRLN--.----GEVAER.PQHLVMRVALGIHGS-----------------...........................................................---.---............DIESVLKTYNLMSLRYFTHASPTLFNAGTPHP
RIR1_NEUCR/141-213 FNYQYFGFKTLERSYLLKLD--.----GQIAER.PQHMIMRVAVGIWGD-----------------...........................................................---.---............DVERVIETYNLMSLKTFTHASPTLFNAGTPQP
O41269_NPVSL/140-212 FNYDYFGFKTMQRSYLFKIN--.----GITVER.PQYMMMRVAIGIHGR-----------------...........................................................---.---............DIDAAIETYNLMSNGYFTHASPTLFSAATPKA
RIR1_ASFB7/111-188 YKLSLLGIETMKNSYLLKNKD-.----GVIMER.PQDAYMRVAIMIYGMGKVV-------------...........................................................---.---............NIKMILLTYDLLSRHVITHASPTMFNAGTKKP
RIR1_BUCAI/141-220 MNFSYAAVKQLEGKYLIQNRVN.----GKIYES.AQFLYILISACLFSQYPKNV------------...........................................................---.---............RMNYIHRFYNAISTFKISLPTPIMSGVRTPTR
Q9JZ50_NEIMB/143-222 MSFSYAAVKQLEGKYLVQNRVT.----RQIYET.PQFLYVLVAMCLFSKYPKEA------------...........................................................---.---............RLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTR
RIR1_SALTY/141-220 MTFSYAAVKQLEGKYLVQNRVT.----GEIYES.AQFLYILVAACLFSNYPR--------------...........................................................---.---..........etRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTR
RIR1_BPT4/139-217 MEFTYSGAMQLKEKYLVKDKTT.----GQIYET.PQFAFMTIGMALHQDEP---------------...........................................................---.---..........vdRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTR