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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00317 phylogeny
for nucleotide alignment


 
((((((((((((((((((((((((RIR3_YEAST/141-213,RIR1_TRYBB/146-223),RIR1_NEUCR/141-213),(RIR1_SCHPO/141-213,((O41269_NPVSL/140-212,(O12935_9NUCL/138-210,Q65357_NPVMB/132-204)),((RIR1_ARATH/141-213,(RIR1_PLAF4/139-211,RIR1_CRYPV/139-211)),RIR1_VACCC/141-213)))),Q9QAL9_WSSV/157-236),RIR1_CAEEL/147-219),RIR1_DROME/152-224),O41111_CHVP1/155-227),RIR1_ASFB7/111-188),(RIR1_HELPJ/135-211,(Q9PJ87_CAMJE/134-210,((RIR1_TREPA/237-314,(Q97E39_CLOAB/134-212,RIR1_AQUAE/152-230)),((Q9KFH8_BACHD/120-198,Q9PE32_XYLFA/208-292),((RIR1_BPT4/139-217,((RIR1_SALTY/141-220,Q9JZ50_NEIMB/143-222),RIR1_BUCAI/141-220)),RIR1_SYNY3/167-239)))))),((((Q9UYA0_PYRAB/113-268,(Q97CL0_THEVO/111-247,Q97ZH9_SULSO/114-198)),(((O33839_THEMA/13-102,Q9YA77_AERPE/72-143),O28609_ARCFU/1-81),O26748_METTH/2-82)),O53767_MYCTU/107-188),((O55716_IRV6/12-79,Q9ZD34_RICPR/19-85),Q9A2R4_CAUCR/36-102))),Q9K940_BACHD/108-182),(Q9HPG8_HALN1/26-171,Q9RRW1_DEIRA/78-151)),(Q9HMU3_HALN1/138-216,(Q9L3F5_STRCO/143-221,(Q9I4I1_PSEAE/293-368,RIR1_CHLPN/375-451)))),(((O69273_CORAM/103-177,(Q9A175_STRPY/90-164,((RIR1_MYCPN/96-170,(Q98Q28_MYCPU/91-165,Q9XC22_MYCGA/91-165)),((Q99Z63_STRPY/92-166,Q97QM4_STRPN/92-166),(((RIR1_BACSU/90-164,O64173_BPSPC/89-163),Q99VP2_STAAM/108-182),Q9CGW7_LACLA/92-166))))),RIR3_ECOLI/97-171),Q9RZL7_DEIRA/90-163)),RIR1_HHV7J/141-226),((((O36411_9GAMA/88-188,Q66663_9GAMA/103-203),(((Q99CY1_BHV4/104-203,RIR1_SHV21/87-187),(Q9J2J1_9GAMA/117-213,P88952_HHV8/115-211)),O41962_MHV68/96-191)),(RIR1_EBV/90-182,Q993F4_9GAMA/95-187)),Q9DWE5_RCMVM/394-483)),(RIR1_HHV23/497-584,Q99BK3_9ALPH/138-224)),RIR1_PRVKA/187-273),RIR1_BHV1C/131-220),O72889_FHV1/131-218),O39263_9ALPH/129-218),Q9QH53_9ALPH/129-219),(Q9E1Z6_9ALPH/124-215,RIR1_VZVD/120-211)),Q89942_MEHV1/170-258,Q9WSX4_9ALPH/147-235);
((((((((((((((((((((((((RIR3_YEAST/141-213:0.16785,RIR1_TRYBB/146-223:0.27320):0.11198,RIR1_NEUCR/141-213:0.22618):0.05992,(RIR1_SCHPO/141-213:0.14093,((O41269_NPVSL/140-212:0.23455,(O12935_9NUCL/138-210:0.24673,Q65357_NPVMB/132-204:0.34239):0.08277):0.06614,((RIR1_ARATH/141-213:0.19967,(RIR1_PLAF4/139-211:0.19474,RIR1_CRYPV/139-211:0.18997):0.06023):0.06787,RIR1_VACCC/141-213:0.24477):0.07046):0.07548):0.05623):0.07511,Q9QAL9_WSSV/157-236:0.33024):0.06120,RIR1_CAEEL/147-219:0.18110):0.10552,RIR1_DROME/152-224:0.11548):0.10309,O41111_CHVP1/155-227:0.40077):0.07479,RIR1_ASFB7/111-188:0.40503):0.21050,(RIR1_HELPJ/135-211:0.19850,(Q9PJ87_CAMJE/134-210:0.14027,((RIR1_TREPA/237-314:0.45483,(Q97E39_CLOAB/134-212:0.26450,RIR1_AQUAE/152-230:0.32822):0.08259):0.08775,((Q9KFH8_BACHD/120-198:0.19962,Q9PE32_XYLFA/208-292:0.44731):0.29795,((RIR1_BPT4/139-217:0.21380,((RIR1_SALTY/141-220:0.16693,Q9JZ50_NEIMB/143-222:0.17347):0.14612,RIR1_BUCAI/141-220:0.15593):0.22639):0.21744,RIR1_SYNY3/167-239:0.47815):0.20235):0.06474):0.13671):0.18137):0.22503):0.14099,((((Q9UYA0_PYRAB/113-268:0.51290,(Q97CL0_THEVO/111-247:0.28901,Q97ZH9_SULSO/114-198:0.40341):0.09391):0.12150,(((O33839_THEMA/13-102:0.49826,Q9YA77_AERPE/72-143:0.41976):0.14905,O28609_ARCFU/1-81:0.20970):0.07220,O26748_METTH/2-82:0.30851):0.05328):0.09705,O53767_MYCTU/107-188:0.40851):0.21635,((O55716_IRV6/12-79:0.63471,Q9ZD34_RICPR/19-85:0.23998):0.33608,Q9A2R4_CAUCR/36-102:0.11663):0.27723):0.02374):0.05332,Q9K940_BACHD/108-182:0.96282):0.04530,(Q9HPG8_HALN1/26-171:0.38479,Q9RRW1_DEIRA/78-151:0.48338):0.08000):0.01239,(Q9HMU3_HALN1/138-216:0.25629,(Q9L3F5_STRCO/143-221:0.31151,(Q9I4I1_PSEAE/293-368:0.11671,RIR1_CHLPN/375-451:0.51732):0.13268):0.05994):0.06971):0.15677,(((O69273_CORAM/103-177:0.15316,(Q9A175_STRPY/90-164:0.20362,((RIR1_MYCPN/96-170:0.21771,(Q98Q28_MYCPU/91-165:0.20610,Q9XC22_MYCGA/91-165:0.30208):0.06039):0.10918,((Q99Z63_STRPY/92-166:0.13109,Q97QM4_STRPN/92-166:0.18637):0.05737,(((RIR1_BACSU/90-164:0.21544,O64173_BPSPC/89-163:0.19634):0.13919,Q99VP2_STAAM/108-182:0.25985):0.16554,Q9CGW7_LACLA/92-166:0.14065):0.06648):0.15810):0.04322):0.22676):0.09247,RIR3_ECOLI/97-171:0.28576):0.24153,Q9RZL7_DEIRA/90-163:0.26635):0.40572):0.28282,RIR1_HHV7J/141-226:1.74588):0.00000,((((O36411_9GAMA/88-188:0.36457,Q66663_9GAMA/103-203:0.24494):0.07847,(((Q99CY1_BHV4/104-203:0.24238,RIR1_SHV21/87-187:0.40058):0.17497,(Q9J2J1_9GAMA/117-213:0.25602,P88952_HHV8/115-211:0.22769):0.11691):0.11004,O41962_MHV68/96-191:0.23599):0.13383):0.14071,(RIR1_EBV/90-182:0.20163,Q993F4_9GAMA/95-187:0.45101):0.10221):0.21685,Q9DWE5_RCMVM/394-483:0.63772):0.10195):0.09146,(RIR1_HHV23/497-584:0.25934,Q99BK3_9ALPH/138-224:0.19112):0.25932):0.21518,RIR1_PRVKA/187-273:0.16108):0.08983,RIR1_BHV1C/131-220:0.09806):0.19851,O72889_FHV1/131-218:0.35980):0.13370,O39263_9ALPH/129-218:0.28473):0.08096,Q9QH53_9ALPH/129-219:0.49009):0.08891,(Q9E1Z6_9ALPH/124-215:0.19679,RIR1_VZVD/120-211:0.25062):0.18129):0.23885,Q89942_MEHV1/170-258:0.16279,Q9WSX4_9ALPH/147-235:0.18776);