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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00308 alignment
(14 sequences with 339 aa)


DNAA_THEMA/98-411 LNPDYTFENFVVGPGNSFAYHAALEVAKH-PGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEP.DLRVMYITSEKFLNDLVDSMKE--GKLNEFREKYRkKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE....IEHGE....-.LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETT---GKEVDLKEAILLLKDFIKPnRVKAMD....-PIDELIEIVAKVTGVPREEILSNSRNVKALTARRIGMYVAKNYLKSSLRTIAEKFN-RSHPVVVDSVKKV
DNAA_STRCO/317-632 LNPKYLFDTFVIGASNRFAHAAAVAVAEA-PAK-AYNPLFIYGESGLGKTHLLHAIGHYARSLYP.GTRVRYVSSEEFTNEFINSIRD--GKGDSFRKRYR.EMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV....QEQLN....-.APPEVLEFIASRISRNIRELEGALIRVTAFASLN---RQPVDLGLTEIVLKDLIPGgEDSAPE....ITSTAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGALFGGRDHTTVMHADRKI
DNAA_MICLU/174-487 LNDRYHFETFVIGSSNRFAHAAANAVAEA-PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYP.GLRVRYVNSEEFTNDFINSIRH--DEGASFKQVYR.NVDILLIDDIQFLADKEATVEEFFHTFNTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGLITDIQPPDLETRIAILRKKAE....AEGLV....-.APPEALEYIASRISTNIRELEGALIRVTAFASLN---RQTVDIELAEHVLKDLIT-.DETAHE....ITPELILHATGEYFNLTLEELTSKSRTRTLVTARQIAMYLLRELTEMSLPKIGQVLGGRDHTTVIHADRKI
DNAA_MYCLE/163-475 LNRRYTFETFVIGASNRFAHAAALAIAEA-PAR-AYNPLFIWGESGLGKTHLLHAAGNYAQRLFP.GMRVKYVSTEEFTNDFINSLRD--DRKVAFKRSYR.DVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQ....MERLA....-.VPGDVLELIASSIERNIRELEGALIRVTAFASLN---KTAIDKALAEIVLRDLIA-.DASTMQ....ISAATIMTATAEYFDTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKI
DNAA_BACSU/111-424 LNPKYTFDTFVIGSGNRFAHAASLAVAEA-PAK-AYNPLFIYGGVGLGKTHLMHAIGHYVIDHNP.SAKVVYLSSEKFTNEFINSIRD--NKAVDFRNRYR.NVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAK....AEGLD....-.IPNEVMLYIANQIDSNIRELEGALIRVVAYSSLI---NKDINADLAAEALKDIIP-.SSKPKV....ITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSREMTDSSLPKIGEEFGGRDHTTVIHAHEKI
DNAA_PSEPK/171-483 LNRTFTFDTFVEGKSNQLARAAAWQVADN-PKH-GYNPLFLYGGVGLGKTHLMHAVGNHLLKKNP.NAKVVYLHSERFVADMVKALQL--NAINEFKRFYR.SVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD....QAKVE....-.LPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFM---GRDITIELIRESLKDLLA-.-LQDKL....VSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMFGGRDHTTVLHACRKI
DNAA_BUCAP/119-431 INKKHSFENFIEGKSNQLARAAASQVAKN-PGN-SYNPLFLYGGTGLGKTHLLHAIGNGILAYKY.NVKIIYMHSERFVQDMVKALQN--NAIEKFKLYYR.SVDALLIDDIQFFAHKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAILIKKAD....ENNIV....-.LSDEVAFFIAKHLRSNVRELEGALNRVIVNANFT---HRSITVEFVREALRDILA-.-LQEKL....VTIANIQKTVAEYYKIKVADLLSRRRSRSVARPRQMAMAMAKELTNHSLPEIGDAFSGRDHTTVLHACRKI
DNAA_HAEIN/119-431 LNTKHLFDNFVEGKSNQLARAVGQKLAQA-PGEPSANPFFLYGGTGLGKTHLLHAIGNGILADKP.NARVLYIHANNFMQHMVKAVRD--NKMDQFKKFYR.SLDALLVDDIQFFAEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAILLKKAE....EHNMN....-.LPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFK---GGDIDIDFVRDTLKDILA-.-LQERL....VTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIGRAFD-RDHTTVLNACREV
DNAA_BORBU/143-462 LKKRYTFENFIIGPNNKLAYNASLSISKN-PGK-KYNPCLIYGGVGLGKTHLLQSIGNKTEELHH.NLKILYVTAENFLNEFVESIKT--HETKKFKKKYR.YLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKSRFTRGLNVDISKPNFELRAAIVEKKAE....EDGIN....-.VPKNILNLVAQKVTTNVRDLEAAVTKLKAYIDLD---NIEIDIEIVEKIIKEIIIYeKETTNEpnnkINIENIKKILLRELKITHKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKI
DNAA_RHIME/139-457 LDQRYGFDSFVEGSSNRVALAAARTIAEAGAGAVRFNPLFIHSSVGLGKTHLLQAIALAALQSAR.APRVVYLTAEYFMWRFATAIRD--NDALSLKESLR.NIDLLIIDDMQFLQGKS-IQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAIEMEGPDYEMRLEMLKRRLE....AARQDdasl-eIPLEILSHVARNVTASGRELEGAFNQLLFRRSFEP----QLSIERVDELLGHLVN-.AGEPRR....VRIEDIQRVVAKHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKI
DNAA_CAUCR/149-467 LQERFTFETFVPGPANEFAHAVARRIANWADGH--FNPVLFHGPYGFGKTHLLNALAWEAMRNAP.EKRVVYLTAERFLSTFVRAVMD--RQTAAFKEELR.AADLLIIDDVHFIAGKQSTQEELFHTLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRNLRLGILERKIQtlgaAHGFE....PsIRPEVMQFLADRFTDSVRELEGALNTLSARAGEG---LSRMTLDEVQAILRPHLR-.-SGEKR....ITIDDIQKATAEHYGMKQADLLSERRNRAVARPRQAAMWLAKQLTTRSLPDIGRRFGGRDHTTVLHAVRRI
DNAA_SPICI/106-426 YYENYTFENFVRGDSNHEAMQAALAVALD-LGK-KWNPLFIYGDSGLGKTHLLHAIENKVNEIYKtNNRVKYLKADEFGKIAMDILNQGHEIIEAFKTSYD.IYDCLLIDDIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGLDSPDFETALKILEQKLK....HQNNL....GlFSEESLEFIALNFNSDVRKLEGAIKRLLFLAVMNKKPNEIITLADVEKAFKNAPLQ.-NNEK-....ITPKKIKQIVADSYNITIKAMMSKSRVSNVMQARQLAMYFCRTLLDEPFTRIGTEFGGKDHTTVMNSVKKV
DNAA_MYCCA/110-426 NENTFEN--FVIGSSNEQAFIAVQTVSKN-PGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFS.DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVC.QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK....NQNIK....TeVTNEAINFISNYYSDDVRKIKGSVSRLNFWSQQN-PEEKVITIEIISDLFRDIPT-.-SKLGI....LNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEILNHTLAQIGEEFGGRDHTTVINAERKI
DNAA_MYCGE/101-418 LSKNYTFQNFVISEGNKRAYEAGVRLAETQDNE--FSPLFIYGETGLGKTHLLQAIGNEKFRNFP.NARVKYVVSSDFAQEVVDAFYQRDKGIEKLKKNYE.NLDLVLIDDTQIFGRKEKTLEILFNIFNNLVLNKKQIVLVSDKAPDELIDIDARMISRFKSGLLLKIEKHNLSSLCEILTVKLK....EKDPN....IqITNEARHDAAQISGNDVRALNGIATKLLFFAKTSK--QNLINTENLKEILFEEFEK.-FHKKS....FDPYLLIENVCRRFNVPMDSVLSENRKAELVRVRDVCNYLLRQKYNMQFQQIGKIFK-RSHSSVLMAVKRV