EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00268 alignment
(13 sequences with 897 bp)


RIR4_SALTY/1-281 ATGAAATTATCTCGTATTAGCGCCATCAACTGG------AACAAGATCCAGGACGACAAAGATCTGGAGGTATGGAACCGGCTGACCAGTAACTTCTGGCTGCCGGAAAAAGTGCCGTTATCGAATGATATTCCGGCCTGGCAGACG---CTGAGCGCCGCCGAACAGCAGCTCACCATTCGCGTGTTTACGGGACTTACGCTGCTCGACACTATCCAGAACATCGCAGGCGCGCCGTCGTTAATGGCAGATGCCATCACGCCGCATGAAGAGGCAGTGCTGTCGAACATCAGCTTTATGGAAGCGGTACACGCCCGCTCTTACAGTTCTATTTTCTCCACGCTGTGC------CAGACGAAAGAGGTTGATGCCGCCTACGCCTGGAGCGAAGAAAACCCACCGCTTCAGCGTAAGGCGCAGATTATTTTAGCTCATTACGTCAGCGATGAACCG---CTAAAGAAAAAG---ATTGCCAGCGTCTTTTTAGAGTCTTTTCTGTTCTATTCCGGCTTCTGGTTGCCGATGTATTTCTCCAGCCGCGGTAAGCTCACGAACACTGCCGACCTGATTCGTTTAATCATTCGCGATGAAGCGGTTCACGGTTATTATATTGGCTATAAGTATCAGATAGCGCTACAAAAACTATCGGCAATCGAGCGTGAAGAGTTAAAGCTTTTCGCGCTGGATTTGTTGATGGAACTGTACGACAACGAAATCCGCTACACAGAAGCGTTATATGCGGAAACCGGCTGG------------------.........GTTAACGACGTCAAAGCCTTCTTGTGCTACAACGCCAATAAAGCCTTAATGAACCTGGGTTATGAGGCGTTATTTCCGCCGGAGATG------GCAGACGTGAATCCCGCA
RIR2_YEAST/76-358 GAACCTTTGTTGAATGAAGACAAGGAGAGAACTGTTCTTTTCCCTATCAAGTACCATGAAATCTGGCAAGCCTACAAGCGTGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATCCATGACTGGAACAACAGAATGAACGAAAACGAGAGATTTTTCATTTCCAGAGTTCTTGCCTTTTTCGCCGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAAGTCCAAATTCCAGAGGCAAAGAGTTTCTACGGTTTCCAAATCATGATTGAAAATATTCACTCTGAAACTTACTCCTTGTTGATCGATACCTACATC---AAGGACCCTAAAGAAAGTGAATTCTTGTTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGGCCGAATGGGCTTTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTTGCCTTTGCCTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGGTTGAAAAAGAGAGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGACGAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCATTTGAAG---------AACAAACCAGACCCAGCCATTGTT------------GAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGATACTTCTTG---------GACGCCTTACCAGTTGCTTTGCTAGGTATGAAC.........GCTGACTTAATGAACCAATACGTTGAGTTCGTCGCCGACAGACTGTTGGTTGCTTTCGGTAACAAGAAATACTACAAGGTCGAAAAC------CCCTTCGATTTCATGGAA
RIR2_SCHPO/66-348 GAAGTTGTGCTTCGCCCTAATCCTCACCGCTTTGTTTTGTTTCCAATTAAGTATCACGAAATTTGGCAATTCTACAAGAAGGCTGAAGCATCTTTTTGGACTGCTGAGGAAATTGATCTTTCGAAAGACTTGGTTGATTGGGATAACAAGTTAAATGCTGATGAACGTTACTTTATTTCCACTGTACTCGCCTATTTCGCTGCGTCAGATGGTATTGTTAATGAGAATCTTCTCGAGCGTTTCAGCTCTGAAGTTCAGATCCCTGAAGCTCGTTGTGTTTATGGTTTCCAAATTATGATTGAAAATATTCACTCTGAGACCTACTCACTTTTGCTTGATACATACATT---CGTGAACCTAAGGAAAAACAGCGTCATTTCGATGCTATTTTAACAATGGGTTCTATTAAGGCCAAAGCCAAGTGGGCTCTTCGTTGGATTAATGATGAAGATTCCACCTATGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTAGTCATTTGAAG---------CACAGACCAGGCCGCAAGGTTGTT------------GAAGCCATTATTGTTGAAGCTGTTGATATTGAGAAAGAATACTTCACG---------GACGCTCTTCCCGTTAGTCTGCTTGGTATGAAT.........AAGGATTTGATGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTTGGTTGCTTTGGGCAATGACAAGTACTATAACGTAACCAAT------CCTTTCGATTTCATGGAG
RIR2_HUMAN/70-351 GAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGGTTGACCTCTCCAAGGACATTCAGCACTGGGAATCC---CTGAAACCCGAGGAGAGATATTTTATATCCCATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATA---AAAGATCCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTA---------CACAAACCATCGGAGGAGAGAGTA------------AGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACT---------GAGGCCTTGCCTGTGAAGCTCATTGGGATGAAT.........TGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAAC------CCATTTGACTTTATGGAG
RIR2_CAEEL/62-343 GAGCCGATGCTTCAAGATTTGGATAATCGATTCGTCATCTTCCCACTGAAACATCATGACATCTGGAACTTCTACAAAAAGGCAGTTGCATCATTCTGGACAGTCGAAGAAGTCGATCTTGGAAAGGATATGAACGATTGGGAGAAG---ATGAATGGTGACGAGCAATACTTCATTTCTCGGATCCTTGCCTTCTTTGCCGCATCGGACGGAATTGTCAATGAGAACTTGTGCGAACGATTCTCGAACGAAGTTCAAGTCTCAGAAGCACGGTTTTTCTACGGATTCCAGATTGCCATTGAGAACATTCATTCAGAGATGTACTCGAAGCTGATTGAGACTTATATT---CGTGATGAGACGGAACGAAACACTCTTTTCAACGCCGTTGATGAGTTCGAGTTCATCAAGAAGAAGGCTGACTGGGCTCTTCGCTGGATTTCGGACAAGAAGGCTTCGTTCGCTGAAAGACTCATTGCTTTCGCAGCTGTTGAGGGAATCTTCTTCAGTGGATCATTCGCTTCGATCTTCTGGCTGAAGAAGCGTGGATTGATGCCAGGATTGACACATTCCAATGAGCTCATCTCGAGAGACGAAGGACTTCATCGTGATTTCGCCTGTCTTCTCTACTCAAAGCTTCAA---------AAGAAACTCACTCAACAACGCATC------------TACGATATCATCAAGGACGCTGTGGCCATCGAACAAGAATTCCTGACT---------GAGGCACTTCCAGTTGACATGATTGGCATGAAC.........TGTCGTCTTATGTCACAGTACATCGAGTTTGTCGCCGATCATTTGCTCGTCGAGCTCGGTTGTGACAAGCTTTACAAGTCGAAGAAT------CCATTCGACTTCATGGAG
RIR2_DICDI/12-293 GAACCAATTCTCAAAGAAAATAAAGATAGATTTGTATTATTTCCAATAAAATACCCAGATATCTGGAGAATGTATAAAAAAGCCCTTGCAAGTCATTGGGTAGCTGAAGAAATTGATCTTGGTAATGATAATGTTGATTGGGAATATAAATTAACAGATAATGAACGTCATTTCATCTCACATGTTTTGGCATTTTTTGCTGCATCTGATGGTATTGTAAATGAAAACCTTGCAACTAGATTTATGTCTGAAGTACAAATTCCAGAAGCAAGATGTTTCTATGGTTTTCAAATTGCAATTGAAAATATACATTCTGAAACTTATAGTCTTTTAATTGAAACTTATATT---AAAGATAAGCAAACTAAAGATAAATTATTTAATGCAATTGAAACAATTCCATGTATTAAAAAGAAGGCAGAATGGGCATTAAGATGGATAAATGATTCAGATTCA---TTTGCAGAACGTTTGGTTGCATTTGCAGCAGTTGAGGGTATATTTTTCAGTGGAAGTTTTTGTTCAATATTTTGGTTGAAAAAGAGAGGTTTAATGCAAGGTTTAACATTTTCAAATGAATTAATTTCACGTGACGAAGGTTTACATTGTGATTTCGCATGTCTTCTCTACACAAAGTTACAA---------AGAAAGTTGGATCCAAAAGTCATT------------GAGAAAATGATAAGAGATGCTGTCGAATGTGAAAAGGAATTCATTTGC---------GAATCATTACCAGTGGATTTAATTGGTATGAAC.........TCGCGTTCAATGTCTCAATACATTGAGTTTTGTGCTGATCGTTTAGTGGTTTCTTTAGGTTACAAAAAGATTTTCAACTCTTCAAAT------CCTTTCGAATGGATGGAA
RIR2_ASFB7/9-294 GAGGAATTACTAATTGAAAATTCCCAACGTTTCACTATTTTTCCTATTCAGCACCCCGAATGTTGGAACTGGTATAAAAAATTAGAAAGTTTGACGTGGACGGCGCAGGAGGTAGACATGTGTAAGGACATTGATGATTGGGAAGCC---ATGCCAAAGCCACAGCGCGAATTTTATAAACAAATTTTAGCCTTCTTTGTTGTTGCCGACGAAATTGTTATCGAAAACCTTTTAACCAATTTTATGCGCGAAATTAAAGTAAAGGAAGTGTTATACTTTTATACAATGCAGGCTGCCCAAGAGTGTGTTCATAGTGAAGCCTACTCAATACAGGTAAAAACGCTGATC---CCGGATGAGAAGGAACAACAGCGCATCTTTAGCGGCATTGAAAAACACCCTATCATAAAAAAAATGGCGCAGTGGGTGCGGCAGTGGATGGACCCCGACAGGAACACTCTGGGTGAGCGGCTGGTGGGCTTCGCCGCCGTAGAAGGCATTTTATTTCAAAACCACTTTGTGGCGATCCAGTTTCTTAAGGAACAGAATATTATGCCGGGGCTTGTAAGCTATAATGAGTTTATTTCACGCGATGAGGGGGTGCACTGTAGTTTTGCGTGTTTTCTTATCTCGAATTACGTGTAT------AACATTCCCGAGGAAAAGATCATT------------CACAAAATTTTGAAGGAGGCTGTGGAGTTGGTGGATGAGTTCATTAACTATGCCTTTGACAAGGCAAGAGGAAGAGTTCCCGGTTTTTCA.........AAAGAAATGCTGTTTCAATATATACGCTACTTTACAGATAATTTGTGCTTCATGATGCAGTGCAAAAGTATTTATAAAGTGGGAAAC------CCTTTTCCTCAGATGACT
RIR2_VZVD/1-280 ATGGATCAG---AAAGATTGCAGTCATTTTTTT------TACAGGCCGGAGTGTCCAGATATAAACAATTTACGTGCCCTGAGCATTTCGAATCGTTGGTTAGAAAGCGATTTTATCATTGAAGATGATTATCAATACTTGGACTGT---TTAACGGAAGATGAACTAATATTCTACAGATTTATTTTTACATTTTTATCGGCGGCAGATGATCTGGTAAATGTTAATTTG---GGCTCTCTAACCCAACTCTTTTCCCAAAAGGATATTCACCATTACTACATTGAACAAGAGTGCATCGAGGTTGTCCACGCGCGTGTCTATAGTCAAATTCAACTAATGTTGTTCAGAGGGGATGAATCGTTGCGGGTACAATACGTAAATGTCACTATTAATAATCCGTCGATCCAACAAAAAGTACAATGGTTGGAAGAAAAGGTACGGGACAACCCATCC---GTTGCAGAAAAATATATACTAATGATTCTTATAGAGGGCATTTTTTTTGTATCATCGTTCGCGGCTATTGCATATTTACGCAATAACGGACTATTTGTTGTAACTTGTCAATTTAACGACCTTATAAGCCGAGATGAAGCCATACATACCAGCGCATCGTGTTGTATATACAATAACTATGTACCC------GAAAAACCCGCTATCACCAGAATA------------CATCAACTGTTTTCGGAAGCCGTTGAAATCGAGTGTGCGTTTTTAAAA---------TCCCATGCACCCAAA---ACCCGTTTGGTGAAC.........GTCGATGCAATTACACAATACGTGAAATTCAGCGCGGACAGGCTTTTATCAGCGATTAATGTACCAAAACTATTTAACACCCCACCTCCCGATTCGGACTTTCCACTTGCA
RIR2_EHV1B/12-295 ACCGCAGAATTATCATTAGCAGGTGCGTTTTTT------TATACTCCAGAATGCCCCGATATCGAGCACCTGCGCTCGCTCAGCGTTGCAAACCGCTGGCTGGACACCGACCTTCCCATTTCCGATGACCTCAAGGACGTGGCCAAG---CTCACGCCGGCCGAGCGCGAGTTTTACCGGTTCCTGTTCGCCTTTTTATCTGCCGCCGACGACTTGGTGAATTTGAACCTG---GGCGATCTCTCAGCTCTGTTTACTCAAAAGGACATTCTCCACTACTACATAGAGCAAGAGTCTATTGAGGTTACACACTCCAGGGTATACAGCGCTATACAGCTCATGTTGTTTGGAAACGACGCAGCCGCGCGCGCTAGGTATGTAGCGTCCATCATCGGAGACGCTGCCATCGGACGGAAGGTTGCCTGGCTACAGGCAAAGGTGCGTGAATGCGGATCT---GTGGCGGAGAAGTATATTCTGATGATCCTCATCGAGGGACTCTTTTTCGCATCGTCCTTTGCGTCTATCGCCTATCTCCGTACCCACAACCTATTTGTGGTAACGTGCCAGAGCAATGATTTGATCAGCCGCGACGAGGCGATCCACACTCGCGCCTCGTGCTGCATCTACAACAACTACCTGGGGGGATTTGAGAAGCCCGAGCCCAAAAGGATT------------TATGAGCTGTTCTCCGAGGCGGTGAATATCGAGTGTGAATTTCTGCTA---------TCCCACGCTCCCCAATATAGTCACCTGTTGGAC.........ATCGGGGCCATCATCAGCTACGTACGCTATAGCGCGGATCGCCTTTTGGGTGAAATAGGACTATCCCCCCTGTTTAATGCCCCCAAACCATCCCCGAGCTTTCCTCTCGCC
RIR2_BHV1C/7-288 GCGGCGACCCTCACGCGTAAATACAAATACTTT------TACGAGACCGAGTGCCCCGACCTAGATCACTTGCGGTCGCTCAGCGTCGCAAACCGCTGGCTGGAGACCGAGTTTCCCCTAGCGGACGACGCCAAGGACGTGGCGCGG---CTCAGCGGCGCCGAGCTGGAGTTTTACCGCTTTCTGTTCGCGTTCCTCTCGGCCGCCGATGACCTCGTGAACGTCAACCTC---GGGGACCTGTCCGAGCTGTTCACCCAAAAAGACATCCTGCATTACTATATCGAGCAGGAGTCCATCGAAGTGGTGCACTCGCGGGTGTACAGCGCCATACAGCTGCTGCTCTTTAGAAACGACGCGGTGGCGCGCGCGGGCTACGTAGAGGGCGCCCTCGGCGACCCGGCGGTCCGGCGCAAGGTGGACTGGCTCGAGCGGCGCGTGGCCGCGGCAGAGTCG---GTGGCCGAAAAGTACGTGCTCATGATTCTAATCGAGGGCATTTTTTTCTCCTCCTCGTTTGCGGCGATTGCCTACCTGCGCACCCACAACCTTTTCGTCGTGACGTGCCAAACCAACGACCTCATCAGCCGCGACGAAGCCGTGCACACGGCCGCGTCGTGCTGCATCTTCGACAACTACCTCGGCGGG---GAGCGGCCGCCGCCGGCCCGCATC------------TACGAGCTGTTCCGCGAAGCGTGGAAATTGAGCGCGAGTTTATTT------------GGTTGCGCGCCGCGCGGCAGTCATATACTTGAC.........GTGGAGGCTATTTCTGCGTACGTCGAGTACAGCGCGGACCGCCTGCTCGCTGCTATCCAGCTGCCTCCTCTGTTTGGCACCCCGCCTCCTGGGACCGATTTTCCTTTGGCC
RIR2_HHV11/28-314 ATTCCAAAGTGCCCCGACCCCGAGAGGTACTTC------TACACCTCCCAGTGTCCCGACATTAACCACCTGCGCTCCCTCAGCATCCTTAACCGCTGGCTGGAAACCGAGCTTGTTTTCGTGGGGGACGAGGAGGACGTCTCCAAG---CTTTCCGAGGGCGAGCTCAGCTTTTACCGCTTCCTCTTCGCTTTCCTGTCGGCCGCCGACGACCTGGTTACGGAAAACCTG---GGCGGCCTCTCCGGCCTGTTTGAGCAGAAGGACATTCTCCACTACTACGTGGAGCAGGAATGCATCGAAGTCGTACACTCGCGCGTGTACAACATCATCCAGCTGGTGCTTTTCCACAACAACGACCAGGCGCGCCGCGAGTACGTGGCCGGTACCATCAACCACCCGGCCATCCGCGCCAAGGTGGACTGGTTGGAAGCGCGGGTGCGGGAATGCGCCTCC---GTTCCGGAAAAGTTCATTCTCATGATCCTCATCGAGGGCATCTTTTTTGCCGCCTCGTTTGCCGCCATCGCCTACCTTCGCACCAACAACCTTCTGCGGGTCACCTGCCAGTCAAACGACCTCATCAGCCGGGACGAGGCCGTGCACACGACGGCCTCGTGTTACATCTACAACAACTACCTCGGCGGGCACGCCAAGCCCCCGCCCGACCGCGTG------------TACGGGCTGTTCCGCCAGGCGGTCGAGATCGAGATCGGATTTATCCGA---------TCCCAGGCGCCGACGGACAGCCATATCCTGAGCccggcggcgCTGGCGGCCATCGAAAACTACGTGCGATTCAGCGCGGATCGCCTGTTGGGCCTTATCCACATGAAGCCACTGTTTTCCGCCCCACCCCCCGACGCCAGCTTTCCGCTGAGC
RIR2_SHV21/1-279 ATGGACTCTGTTAAG---------AAGTACTTG------TATACTTGCGACCATGTTGGGTTTTTAGAGCTAACAAAAGAAACTTGGAAAAATCGGTGGTTTCCTAGTCAAGTTCCTCTCCAAGGAGATGTGTGTTGTGTGGATATG---TTAAATGAAAGAGATCTTGAATTTTATAAATTTTTATTTACTTTTCTTGGGATGGCAGAAAAATTAGTTAACATTAATATT---GAAGATCTTTTAAGTCAGTTTGATAGTCATGATATAAGTCATTACTATGCTGAACAAATGGCTATGGAAAACATCCATGGAAAAGTGTATGCTAACATTTTGAACATGCTGTTTAAAAATAACATTACAGAAGTCTACTCTTATGCTTGTGACATAATGAATGATAGTGCTTTGCAAGAAAAACTAAGGTGGTTGAACGGCCGCGTTACAGAAGCATCTGAT---AAAGCTGAAAAAATTTTATTGTTTTTGCTAGTTGAAGGAATCTTTTTTATTAGTTCATTTTTTAGTATTGGATTGTTTAGAGTTCGAGGAATTATGAATGGAATCTGTCTCGCAAATGATTACATTGCTAGAGATGAAATGTTGCACACATCTGCTGCTGCTCTACTATATAACACAATGACTAAGTCCTCAGAGAGGCCTTCAGAAGACTGGATT------------TATAAGTTGTTTAGAGAAGCAGTTGAAGTGGAGTTTAAATTTATAGCT---------GCAAAAGGCTATGGT---GTTTCACTTGTAAAT.........GTGCATGAAATAAGACAGTTTTTGCAAGCTACTGCTGACAGAATTTTAGAAAGTATTAATTTAAATCCAATCTATGGCTCACTTCCTCCAGAA---AATTGTCCTTTAGCA
RIR2_EBV/1-276 ATGTCC------------------AAGTTGTTG------TACGTGCGTGATCATGAGGGCTTTGCCTGCCTAACGGTCGAAACCCACCGCAACCGCTGGTTCGCGGCTCACATTGTCCTCACCAAGGACTGCGGGTGTCTCAAGCTA---CTCAATGAGAGGGACTTGGAGTTTTACAAGTTCCTCTTTACGTTCCTGGCCATGGCCGAGAAGCTTGTGAACTTTAACATT---GATGAACTGGTCACCAGCTTCGAGAGCCACGACATTGATCACTACTACACCGAGCAGAAGGCCATGGAGAACGTCCACGGGGAGACTTATGCTAACATTTTAAACATGCTCTTTGATGGGGACAGGGCGGCGATGAACGCCTACGCAGAGGCCATCATGGCCGACGAGGCCCTGCAAGCCAAGATTTCCTGGCTCCGTGACAAGGTGGCGGCCGCCGTCACC---CTGCCGGAGAAGATTCTTGTGTTCCTGCTGATTGAAGGCATCTTCTTCATTAGCTCCTTCTACAGCATAGCCCTGCTGCGGGTCCGGGGCCTAATGCCTGGCATCTGCCTGGCCAATAACTACATAAGTAGGGATGAGCTGCTCCACACCCGCGCTGCCTCCCTGTTATACAATAGCATGACAGCCAAGGCTGACCGACCAAGGGCCACCTGGATC------------CAGGAGCTGTTTCGCACTGCGGTGGAGGTAGAGACTGCCTTCATCGAG---------GCTCGTGGAGAGGGG---GTTACCTTGGTGGAT.........GTGCGAGCCATAAAGCAGTTTCTGGAGGCCACGGCCGATCGCATCCTGGGTGACATTGGTCAGGCTCCCTTGTATGGCACACCACCCCCCAAG---GACTGCCCGCTCACC