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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00258 phylogeny
for nucleotide alignment


 
(((((((((((FLAV_CLOSA/5-148,(((FLAV_TREPA/6-140,(((((FLAW_KLEPN/5-166,FLAV_ENTAG/6-168),(FLAV_AZOCH/5-167,FLAV_RHOCA/5-167)),FLAW_ECOLI/5-160),(FLAV_KLEPN/6-160,FLAV_HAEIN/5-159)),(((FLAV_SYNY3/6-160,(FLAV_SYNP7/5-159,FLAV_ANASP/6-159)),FLAV_SYNP2/5-159),FLAV_HELPJ/6-155))),(FLAV_DESDE/6-140,((FLAV_DESVH/6-140,FLAV_DESVM/6-140),(FLAV_DESSA/6-138,(FLAV_DESGI/6-138,FLAW_DESGI/6-138))))),(FLAW_BACSU/6-139,FLAV_BACSU/6-139))),((((MIOC_ECOLI/5-137,MIOC_HAEIN/5-137),(YQCA_SHIFL/6-140,YQCA_ERWCA/6-140)),(((CYSJ_ECOLI/65-196,(O32214_BACSU/70-201,(O68591_PSEAE/357-487,CYSJ_THIRO/62-193))),((((NOS1_RABIT/763-936,NOS3_HUMAN/521-697),((NS2A_HUMAN/541-672,NOS2_CHICK/538-669),(NOS2_ONCMY/171-302,Q9PU92_CYPCA/538-669))),(O77104_MANSE/521-715,(NOS_RHOPR/507-688,(NOS_ANOST/569-761,NOS_DROME/673-863)))),NOS_LYMST/429-605)),((((((NCPR_ASPNG/68-215,NCPR_SCHPO/55-203),(NCPR_YEAST/62-198,NCPR_CANTR/62-199)),(NCPR_HUMAN/81-218,P91655_DROMT/87-224)),(O48937_PETCR/76-219,(O24425_ESCCA/97-240,Q43235_VICSA/85-229))),(((CYPD_BACSU/495-627,CPXB_BACME/484-616),CYPE_BACSU/488-620),C505_FUSOX/502-636)),(((MTRR_CAEEL/6-142,MTRR_HUMAN/33-169),(Q9U2Y8_CAEEL/5-142,((Q9UHB4_HUMAN/8-145,Q9VSJ5_DROME/5-142),Q9SRU4_ARATH/10-141))),(YJ9F_YEAST/684-826,O94613_SCHPO/8-119))))),(O59761_SCHPO/93-242,YP07_YEAST/207-355))),((O30070_ARCFU/196-327,(O58812_PYRHO/269-403,Q9WZL4_THEMA/258-390)),(((NORV_ECOLI/256-389,(FPRA_RHOCA/278-411,DFA3_SYNY3/285-417)),(O26322_METTH/265-400,FPRA_METTM/261-395)),(O28752_ARCFU/352-483,(Y534_METJA/249-383,Y732_METJA/252-385))))),O26935_METTH/12-130),FLAV_AQUAE/6-155),YHCB_BACSU/5-116),Q9RYU4_DEIRA/9-144),(WRBA_ECOLI/5-134,(O29904_ARCFU/6-141,WRBA_ZYMMO/6-135))),(((YCP4_YEAST/6-137,PST2_YEAST/6-135),P25_SCHPO/9-139),((ALA7_ALTAL/7-139,CLH5_CLAHE/7-139),Q9Y763_PHACH/6-136))),O23807_LITER/7-138),O23207_ARATH/77-209,Q9XH74_PRUAR/7-138);
(((((((((((FLAV_CLOSA/5-148:1.13575,(((FLAV_TREPA/6-140:0.64660,(((((FLAW_KLEPN/5-166:0.17956,FLAV_ENTAG/6-168:0.29330):0.12086,(FLAV_AZOCH/5-167:0.16484,FLAV_RHOCA/5-167:0.24412):0.09079):0.12465,FLAW_ECOLI/5-160:0.36347):0.09699,(FLAV_KLEPN/6-160:0.10831,FLAV_HAEIN/5-159:0.24687):0.14003):0.09164,(((FLAV_SYNY3/6-160:0.17025,(FLAV_SYNP7/5-159:0.17163,FLAV_ANASP/6-159:0.22075):0.04737):0.08520,FLAV_SYNP2/5-159:0.19191):0.13132,FLAV_HELPJ/6-155:0.36442):0.08122):0.19834):0.09151,(FLAV_DESDE/6-140:0.32531,((FLAV_DESVH/6-140:0.17486,FLAV_DESVM/6-140:0.20967):0.11055,(FLAV_DESSA/6-138:0.24184,(FLAV_DESGI/6-138:0.21424,FLAW_DESGI/6-138:0.19302):0.08583):0.05986):0.10830):0.16425):0.12343,(FLAW_BACSU/6-139:0.25975,FLAV_BACSU/6-139:0.42889):0.13336):0.05137):0.04155,((((MIOC_ECOLI/5-137:0.36617,MIOC_HAEIN/5-137:0.34498):0.19830,(YQCA_SHIFL/6-140:0.19487,YQCA_ERWCA/6-140:0.30144):0.36942):0.14009,(((CYSJ_ECOLI/65-196:0.37960,(O32214_BACSU/70-201:0.33457,(O68591_PSEAE/357-487:0.55276,CYSJ_THIRO/62-193:0.29431):0.14845):0.12966):0.10804,((((NOS1_RABIT/763-936:0.14521,NOS3_HUMAN/521-697:0.27042):0.05077,((NS2A_HUMAN/541-672:0.13807,NOS2_CHICK/538-669:0.21836):0.07490,(NOS2_ONCMY/171-302:0.12766,Q9PU92_CYPCA/538-669:0.17025):0.11761):0.19761):0.10907,(O77104_MANSE/521-715:0.26563,(NOS_RHOPR/507-688:0.30453,(NOS_ANOST/569-761:0.15584,NOS_DROME/673-863:0.16575):0.09150):0.06345):0.13469):0.07245,NOS_LYMST/429-605:0.34193):0.32745):0.08213,((((((NCPR_ASPNG/68-215:0.25388,NCPR_SCHPO/55-203:0.41444):0.08493,(NCPR_YEAST/62-198:0.39972,NCPR_CANTR/62-199:0.23551):0.13727):0.08344,(NCPR_HUMAN/81-218:0.21945,P91655_DROMT/87-224:0.19663):0.18233):0.06337,(O48937_PETCR/76-219:0.10557,(O24425_ESCCA/97-240:0.15376,Q43235_VICSA/85-229:0.14935):0.09439):0.23773):0.09103,(((CYPD_BACSU/495-627:0.24425,CPXB_BACME/484-616:0.33828):0.12691,CYPE_BACSU/488-620:0.22355):0.23956,C505_FUSOX/502-636:0.36066):0.25735):0.14114,(((MTRR_CAEEL/6-142:0.32031,MTRR_HUMAN/33-169:0.45416):0.16549,(Q9U2Y8_CAEEL/5-142:0.32001,((Q9UHB4_HUMAN/8-145:0.33815,Q9VSJ5_DROME/5-142:0.30110):0.10149,Q9SRU4_ARATH/10-141:0.32714):0.12912):0.14382):0.10969,(YJ9F_YEAST/684-826:0.39645,O94613_SCHPO/8-119:0.46204):0.17291):0.07905):0.11167):0.10538):0.03161,(O59761_SCHPO/93-242:0.28089,YP07_YEAST/207-355:0.44102):0.54135):0.23427):0.13202,((O30070_ARCFU/196-327:0.48700,(O58812_PYRHO/269-403:0.34020,Q9WZL4_THEMA/258-390:0.27520):0.35903):0.10992,(((NORV_ECOLI/256-389:0.42484,(FPRA_RHOCA/278-411:0.52241,DFA3_SYNY3/285-417:0.48372):0.11871):0.16660,(O26322_METTH/265-400:0.26468,FPRA_METTM/261-395:0.24237):0.17761):0.03298,(O28752_ARCFU/352-483:0.40222,(Y534_METJA/249-383:0.24373,Y732_METJA/252-385:0.18725):0.26245):0.09105):0.04970):0.45704):0.11498,O26935_METTH/12-130:0.76533):0.18545,FLAV_AQUAE/6-155:0.73283):0.44177,YHCB_BACSU/5-116:0.54057):0.20202,Q9RYU4_DEIRA/9-144:0.62883):0.04291,(WRBA_ECOLI/5-134:0.25903,(O29904_ARCFU/6-141:0.40122,WRBA_ZYMMO/6-135:0.29504):0.08358):0.08504):0.19415,(((YCP4_YEAST/6-137:0.27605,PST2_YEAST/6-135:0.20741):0.12788,P25_SCHPO/9-139:0.26206):0.07327,((ALA7_ALTAL/7-139:0.15625,CLH5_CLAHE/7-139:0.24808):0.11098,Q9Y763_PHACH/6-136:0.14934):0.09012):0.07769):0.26623,O23807_LITER/7-138:0.09263):0.10857,O23207_ARATH/77-209:0.37936,Q9XH74_PRUAR/7-138:0.11549);