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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00249 phylogeny
for nucleotide alignment


 
(((((((((((((((((O49538_ARATH/68-113,Q9ZTE4_ARATH/14-59),O49770_ARATH/14-59),(MYB2_PHYPA/67-112,O65720_ARATH/14-59)),Q9ZR24_PERFR/33-78),(O23618_ARATH/68-113,(((((Q9ZTD6_ARATH/3-48,Q9ZTD7_ARATH/58-103),O22179_ARATH/65-110),((O04192_ARATH/102-147,((O65528_ARATH/78-123,(O65263_ARATH/124-169,(MYBA_CHICK/139-184,MYB_DROME/188-233))),MYBH_DICDI/253-298)),Q42575_ARATH/107-152)),(O49765_ARATH/67-112,O49782_ARATH/68-113)),((((O23893_ORYSA/96-141,O65898_ARATH/13-58),O80883_ARATH/73-118),Q9ZTC8_ARATH/3-48),(((O49780_ARATH/14-59,Q02992_PETHY/67-112),(((O22264_ARATH/67-112,(Q9ZTE9_ARATH/14-59,O49019_GOSHI/67-112)),(MYB86_ARATH/67-112,Q43524_LYCES/67-112)),((MYB21_ARATH/75-120,O49020_GOSHI/75-120),O50069_ARATH/63-108))),O64399_ARATH/67-112))))),(((((((O04109_ORYSA/67-112,(MYB1_NEUCR/61-106,Q00658_EMENI/60-105)),(O04140_ORYSA/67-112,O04108_ORYSA/67-112)),MYBC_MAIZE/67-112),(MYB3_HORVU/69-114,O04110_ORYSA/67-112)),MYB1_HORVU/67-112),Q9ZQS3_PERFR/10-55),Q39156_ARATH/35-80)),GL1_ARATH/69-114),(O22895_ARATH/127-173,O22059_ARATH/35-80)),Q9ZTC3_ARATH/63-108),O65366_ANTMA/59-104),O64502_ARATH/82-127),TBF1_YEAST/409-456),(O80435_ARATH/19-68,(P70413_MOUSE/224-268,Q62187_MOUSE/564-608))),((O48523_ARATH/13-66,O64877_ARATH/47-101),(((O24251_PETCR/16-68,((TERF2_MOUSE/442-490,TERF1_CRIGR/380-428),BAS1_YEAST/169-214)),(P78793_SCHPO/32-81,YD3A_SCHPO/55-105)),(REB1_SCHPO/313-357,(Q12457_YEAST/345-389,REB1_KLULA/338-382))))),((((((((((Q9LSH8_ARATH/243-294,Q9M0H0_ARATH/227-278),Q9FG27_ARATH/193-244),((Q9S807_CHLRE/189-240,(Q9SJW0_ARATH/17-68,((((O82801_ARATH/56-104,Q9SIZ5_ARATH/84-135),Q9MA23_ARATH/25-76),(Q9FJV5_ARATH/107-158,Q9XEB2_ARATH/16-67)),((Q9ZPZ8_ARATH/88-139,(Q9LRN5_ARATH/43-110,Q9SVP8_ARATH/39-98)),Q9FH42_ARATH/25-76)))),Q9FK47_ARATH/47-98)),((ARR11_ARATH/195-246,ARR20_ARATH/213-268),Q9LTH4_ARATH/143-193)),(Q9FPE8_ARATH/214-262,Q9FX84_ARATH/197-245)),O81713_ARATH/24-69),(YDPA_SCHPO/71-116,(O62208_CAEEL/409-455,((((O94481_SCHPO/365-410,TFC5_YEAST/417-462),((NCOR1_HUMAN/625-670,Q15044_HUMAN/294-339),(((YGN1_YEAST/557-602,O42194_XENLA/274-320),(((MTA1_HUMAN/285-331,O61907_CAEEL/481-527),((O75046_HUMAN/153-199,((SNT1_YEAST/670-716,NCOR1_HUMAN/437-482),NCOR2_HUMAN/429-474)),EGL27_CAEEL/334-380)),(Q15044_HUMAN/103-148,GEI8_CAEEL/215-260))),Q20733_CAEEL/562-607))),SNT1_YEAST/889-934),O04322_ARATH/118-165)))),SPR1_CAEEL/483-528),(Q61866_MOUSE/451-507,(((O13788_SCHPO/290-335,(((YEPA_SCHPO/247-292,Q9VF03_DROME/652-697),O22811_ARATH/225-270),RSC8_YEAST/312-358)),SWI3_YEAST/524-569),(DNJC1_MOUSE/492-541,Q94216_CAEEL/533-582)))),(Q19953_CAEEL/77-125,((ADA2_YEAST/62-108,O23486_ARATH/88-134),ADA2_HUMAN/72-118)))),(((O62208_CAEEL/356-402,(O15816_DICDI/480-525,MYBH_DICDI/149-195)),((((MYBB_CHICK/31-77,MYBB_XENLA/31-77),((O01719_STRPU/41-87,(MYBA_XENLA/35-80,MYB_DROME/85-130)),MYBA_CHICK/35-81)),MYB_BOVIN/40-86),(Q9ZPU2_ARATH/40-86,O65263_ARATH/12-63))),((((CDC5_SCHPO/58-102,(REB1_SCHPO/365-418,CEF1_YEAST/62-106)),(ETA2_SCHPO/327-371,O15816_DICDI/427-474)),BAS1_YEAST/116-161),(((MYB1_NEUCR/9-55,Q00658_EMENI/7-54),(((P70413_MOUSE/273-329,((O65528_ARATH/26-72,O65263_ARATH/69-118),(((MYBA_CHICK/87-133,O01719_STRPU/93-139),MYB_DROME/136-182),MYBH_DICDI/201-247))),(Q01073_KLULA/213-264,O62208_CAEEL/301-350)),((((O22179_ARATH/13-59,Q42575_ARATH/55-101),O04192_ARATH/50-96),((((Q40920_PICMA/14-61,Q9ZTC3_ARATH/10-57),((((((O23893_ORYSA/43-90,O80883_ARATH/20-67),((MYBC_MAIZE/14-61,O23891_ORYSA/14-61),((MYBP_MAIZE/14-61,((O23892_ORYSA/22-69,MYB3_HORVU/16-63),MYB1_HORVU/14-61)),(((Q43597_ORYSA/14-61,Q96463_HORVU/12-59),O04109_ORYSA/14-61),O04141_ORYSA/14-61)))),O49538_ARATH/14-62),(Q39153_ARATH/14-61,((MYB2_PHYPA/14-61,(O64534_ARATH/16-96,(O23618_ARATH/15-62,(O49649_ARATH/14-61,Q38850_ARATH/25-72)))),O49744_ARATH/14-61))),(Q43524_LYCES/14-61,((O49765_ARATH/14-61,O49782_ARATH/15-62),Q38739_ANTMA/14-61))),((Q39028_ARATH/22-69,((O50069_ARATH/10-57,MYB21_ARATH/22-69),((O49020_GOSHI/22-69,P92986_ARATH/20-67),Q39550_CRAPL/29-76))),GL1_ARATH/16-63))),(O49017_GOSHI/15-62,O49018_GOSHI/14-61)),Q9ZTD7_ARATH/6-52)),O65366_ANTMA/4-53))),(O64502_ARATH/30-76,((CDC5_SCHPO/6-52,Q21119_CAEEL/8-54),CEF1_YEAST/10-56)))))),YBF4_YEAST/75-120,DOT6_YEAST/72-117);
(((((((((((((((((O49538_ARATH/68-113:0.15435,Q9ZTE4_ARATH/14-59:0.16162):0.10861,O49770_ARATH/14-59:0.29680):0.06118,(MYB2_PHYPA/67-112:0.17680,O65720_ARATH/14-59:0.26397):0.06420):0.04479,Q9ZR24_PERFR/33-78:0.30236):0.02235,(O23618_ARATH/68-113:0.17101,(((((Q9ZTD6_ARATH/3-48:0.24230,Q9ZTD7_ARATH/58-103:0.10864):0.17825,O22179_ARATH/65-110:0.32740):0.06657,((O04192_ARATH/102-147:0.15484,((O65528_ARATH/78-123:0.20673,(O65263_ARATH/124-169:0.18397,(MYBA_CHICK/139-184:0.22949,MYB_DROME/188-233:0.19567):0.13857):0.11354):0.06536,MYBH_DICDI/253-298:0.17503):0.13326):0.08467,Q42575_ARATH/107-152:0.17428):0.05177):0.21595,(O49765_ARATH/67-112:0.20361,O49782_ARATH/68-113:0.15641):0.06260):0.03862,((((O23893_ORYSA/96-141:0.24175,O65898_ARATH/13-58:0.11349):0.07417,O80883_ARATH/73-118:0.14102):0.15082,Q9ZTC8_ARATH/3-48:0.09471):0.04789,(((O49780_ARATH/14-59:0.23767,Q02992_PETHY/67-112:0.15150):0.04471,(((O22264_ARATH/67-112:0.15245,(Q9ZTE9_ARATH/14-59:0.25791,O49019_GOSHI/67-112:0.09298):0.03567):0.02377,(MYB86_ARATH/67-112:0.19300,Q43524_LYCES/67-112:0.23745):0.09076):0.02606,((MYB21_ARATH/75-120:0.11080,O49020_GOSHI/75-120:0.19818):0.08303,O50069_ARATH/63-108:0.20526):0.14880):0.07203):0.01026,O64399_ARATH/67-112:0.24275):0.03036):0.08677):0.02480):0.05589):0.10223,(((((((O04109_ORYSA/67-112:0.09859,(MYB1_NEUCR/61-106:0.28642,Q00658_EMENI/60-105:0.31284):0.30559):0.10595,(O04140_ORYSA/67-112:0.11557,O04108_ORYSA/67-112:0.12611):0.05040):0.03533,MYBC_MAIZE/67-112:0.18076):0.04007,(MYB3_HORVU/69-114:0.11332,O04110_ORYSA/67-112:0.19236):0.06104):0.06041,MYB1_HORVU/67-112:0.10893):0.08819,Q9ZQS3_PERFR/10-55:0.09136):0.08766,Q39156_ARATH/35-80:0.18140):0.06588):0.06286,GL1_ARATH/69-114:0.16073):0.01536,(O22895_ARATH/127-173:0.72273,O22059_ARATH/35-80:0.28797):0.21575):0.06414,Q9ZTC3_ARATH/63-108:0.21686):0.13127,O65366_ANTMA/59-104:0.60054):0.14639,O64502_ARATH/82-127:0.39254):0.11624,TBF1_YEAST/409-456:0.58237):0.03703,(O80435_ARATH/19-68:0.48882,(P70413_MOUSE/224-268:0.20350,Q62187_MOUSE/564-608:0.61682):0.27002):0.27435):0.10339,((O48523_ARATH/13-66:0.49237,O64877_ARATH/47-101:0.02225):0.70569,(((O24251_PETCR/16-68:0.32236,((TERF2_MOUSE/442-490:0.37646,TERF1_CRIGR/380-428:0.19718):0.16064,BAS1_YEAST/169-214:0.49737):0.17530):0.06981,(P78793_SCHPO/32-81:0.44230,YD3A_SCHPO/55-105:0.36008):0.12179):0.07870,(REB1_SCHPO/313-357:0.33751,(Q12457_YEAST/345-389:0.12865,REB1_KLULA/338-382:0.15100):0.24321):0.21494):0.11713):0.04332):0.03742,((((((((((Q9LSH8_ARATH/243-294:0.18545,Q9M0H0_ARATH/227-278:0.14094):0.06760,Q9FG27_ARATH/193-244:0.22857):0.04612,((Q9S807_CHLRE/189-240:0.31513,(Q9SJW0_ARATH/17-68:0.17424,((((O82801_ARATH/56-104:0.13036,Q9SIZ5_ARATH/84-135:0.17521):0.10261,Q9MA23_ARATH/25-76:0.15831):0.06183,(Q9FJV5_ARATH/107-158:0.22790,Q9XEB2_ARATH/16-67:0.27747):0.06672):0.06762,((Q9ZPZ8_ARATH/88-139:0.30472,(Q9LRN5_ARATH/43-110:0.07828,Q9SVP8_ARATH/39-98:0.14930):0.13550):0.07975,Q9FH42_ARATH/25-76:0.12887):0.06676):0.02590):0.08310):0.04805,Q9FK47_ARATH/47-98:0.20891):0.03950):0.04348,((ARR11_ARATH/195-246:0.27973,ARR20_ARATH/213-268:0.27657):0.04902,Q9LTH4_ARATH/143-193:0.34087):0.10795):0.17059,(Q9FPE8_ARATH/214-262:0.15306,Q9FX84_ARATH/197-245:0.19589):0.06624):0.48945,O81713_ARATH/24-69:0.25663):0.22868,(YDPA_SCHPO/71-116:0.53988,(O62208_CAEEL/409-455:0.76149,((((O94481_SCHPO/365-410:0.46846,TFC5_YEAST/417-462:0.37105):0.30199,((NCOR1_HUMAN/625-670:0.49244,Q15044_HUMAN/294-339:0.32951):0.16857,(((YGN1_YEAST/557-602:0.60331,O42194_XENLA/274-320:0.34666):0.04410,(((MTA1_HUMAN/285-331:0.13775,O61907_CAEEL/481-527:0.32544):0.24986,((O75046_HUMAN/153-199:0.41459,((SNT1_YEAST/670-716:0.62212,NCOR1_HUMAN/437-482:0.10050):0.15143,NCOR2_HUMAN/429-474:0.04769):0.52684):0.04789,EGL27_CAEEL/334-380:0.44639):0.18806):0.08083,(Q15044_HUMAN/103-148:0.30119,GEI8_CAEEL/215-260:0.48731):0.19345):0.07402):0.04459,Q20733_CAEEL/562-607:0.44885):0.18443):0.04937):0.10872,SNT1_YEAST/889-934:0.60059):0.10778,O04322_ARATH/118-165:0.36864):0.05109):0.02777):0.02813):0.06711,SPR1_CAEEL/483-528:0.78738):0.06377,(Q61866_MOUSE/451-507:0.66074,(((O13788_SCHPO/290-335:0.23390,(((YEPA_SCHPO/247-292:0.26683,Q9VF03_DROME/652-697:0.32692):0.04328,O22811_ARATH/225-270:0.36936):0.06760,RSC8_YEAST/312-358:0.34991):0.10454):0.05539,SWI3_YEAST/524-569:0.46269):0.11779,(DNJC1_MOUSE/492-541:0.48946,Q94216_CAEEL/533-582:0.28802):0.30290):0.04435):0.07670):0.02051,(Q19953_CAEEL/77-125:0.42430,((ADA2_YEAST/62-108:0.32027,O23486_ARATH/88-134:0.31782):0.11405,ADA2_HUMAN/72-118:0.27990):0.18357):0.12055):0.26971):0.07401,(((O62208_CAEEL/356-402:0.54484,(O15816_DICDI/480-525:0.50988,MYBH_DICDI/149-195:0.12791):0.12737):0.03925,((((MYBB_CHICK/31-77:0.26445,MYBB_XENLA/31-77:0.22300):0.16541,((O01719_STRPU/41-87:0.33936,(MYBA_XENLA/35-80:0.13520,MYB_DROME/85-130:0.53420):0.04330):0.13778,MYBA_CHICK/35-81:0.13056):0.05528):0.05588,MYB_BOVIN/40-86:0.07778):0.21932,(Q9ZPU2_ARATH/40-86:0.22440,O65263_ARATH/12-63:0.46919):0.12645):0.03561):0.08064,((((CDC5_SCHPO/58-102:0.25316,(REB1_SCHPO/365-418:0.53043,CEF1_YEAST/62-106:0.51045):0.11389):0.18611,(ETA2_SCHPO/327-371:0.65092,O15816_DICDI/427-474:0.24248):0.16762):0.06106,BAS1_YEAST/116-161:0.43286):0.07058,(((MYB1_NEUCR/9-55:0.35434,Q00658_EMENI/7-54:0.34819):0.15191,(((P70413_MOUSE/273-329:0.69036,((O65528_ARATH/26-72:0.17816,O65263_ARATH/69-118:0.25949):0.03351,(((MYBA_CHICK/87-133:0.06951,O01719_STRPU/93-139:0.24992):0.07493,MYB_DROME/136-182:0.25648):0.10224,MYBH_DICDI/201-247:0.18504):0.04390):0.04501):0.04240,(Q01073_KLULA/213-264:0.56212,O62208_CAEEL/301-350:0.52697):0.18101):0.02269,((((O22179_ARATH/13-59:0.30588,Q42575_ARATH/55-101:0.19344):0.05365,O04192_ARATH/50-96:0.17051):0.19902,((((Q40920_PICMA/14-61:0.26905,Q9ZTC3_ARATH/10-57:0.15313):0.05024,((((((O23893_ORYSA/43-90:0.16607,O80883_ARATH/20-67:0.20356):0.13465,((MYBC_MAIZE/14-61:0.17938,O23891_ORYSA/14-61:0.15234):0.05204,((MYBP_MAIZE/14-61:0.18196,((O23892_ORYSA/22-69:0.24973,MYB3_HORVU/16-63:0.15232):0.04523,MYB1_HORVU/14-61:0.12108):0.02733):0.07330,(((Q43597_ORYSA/14-61:0.13240,Q96463_HORVU/12-59:0.21148):0.00501,O04109_ORYSA/14-61:0.15187):0.02839,O04141_ORYSA/14-61:0.08528):0.02819):0.03020):0.09549):0.10226,O49538_ARATH/14-62:0.26991):0.09976,(Q39153_ARATH/14-61:0.16432,((MYB2_PHYPA/14-61:0.19017,(O64534_ARATH/16-96:0.23978,(O23618_ARATH/15-62:0.20074,(O49649_ARATH/14-61:0.22715,Q38850_ARATH/25-72:0.19389):0.09529):0.03347):0.09045):0.08202,O49744_ARATH/14-61:0.12500):0.08121):0.05301):0.04730,(Q43524_LYCES/14-61:0.23672,((O49765_ARATH/14-61:0.13244,O49782_ARATH/15-62:0.18816):0.07954,Q38739_ANTMA/14-61:0.14186):0.09079):0.06076):0.07463,((Q39028_ARATH/22-69:0.20010,((O50069_ARATH/10-57:0.35407,MYB21_ARATH/22-69:0.17258):0.09930,((O49020_GOSHI/22-69:0.19053,P92986_ARATH/20-67:0.24044):0.06613,Q39550_CRAPL/29-76:0.14588):0.06107):0.06085):0.12365,GL1_ARATH/16-63:0.15056):0.07161):0.08636):0.11031,(O49017_GOSHI/15-62:0.10832,O49018_GOSHI/14-61:0.21027):0.09548):0.27582,Q9ZTD7_ARATH/6-52:0.25495):0.08188):0.10106,O65366_ANTMA/4-53:0.67563):0.05077):0.09631):0.05965,(O64502_ARATH/30-76:0.43495,((CDC5_SCHPO/6-52:0.21201,Q21119_CAEEL/8-54:0.12897):0.21991,CEF1_YEAST/10-56:0.23195):0.22596):0.11287):0.12345):0.06938):0.05291):0.75360,YBF4_YEAST/75-120:0.11821,DOT6_YEAST/72-117:0.15628);