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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00249 phylogeny
for amino acid alignment


 
((((((((((((((((((((((((((((O23618_ARATH/68-113,(MYB1_MAIZE/69-114,(O04140_ORYSA/67-112,O04108_ORYSA/67-112))),(((((O22179_ARATH/65-110,((MYBH_DICDI/253-298,((MYBA_CHICK/139-184,MYB_DROME/188-233),(O65263_ARATH/124-169,O65528_ARATH/78-123))),Q42575_ARATH/107-152)),((Q9ZTD6_ARATH/3-48,Q9ZTD7_ARATH/58-103),O64502_ARATH/82-127)),O04192_ARATH/102-147),(MYB1_NEUCR/61-106,Q00658_EMENI/60-105)),Q9ZTE9_ARATH/14-59)),Q9ZTC8_ARATH/3-48),(O64399_ARATH/67-112,(O49765_ARATH/67-112,O49782_ARATH/68-113))),((O49780_ARATH/14-59,O04109_ORYSA/67-112),Q02992_PETHY/67-112)),((O22264_ARATH/67-112,O49019_GOSHI/67-112),(((Q9ZQS3_PERFR/10-55,(((Q9ZTC3_ARATH/63-108,MYBC_MAIZE/67-112),GL1_ARATH/69-114),Q39156_ARATH/35-80)),O22059_ARATH/35-80),MYB1_HORVU/67-112))),(Q43524_LYCES/67-112,Q9ZR24_PERFR/33-78)),(((O04110_ORYSA/67-112,O65720_ARATH/14-59),P81394_ANTMA/67-112),(((((O49538_ARATH/68-113,Q9ZTE4_ARATH/14-59),O49770_ARATH/14-59),MYB2_PHYPA/67-112),((O23893_ORYSA/96-141,O65898_ARATH/13-58),O80883_ARATH/73-118)),(MYB3_HORVU/69-114,MYB86_ARATH/67-112)))),((MYB21_ARATH/75-120,O49020_GOSHI/75-120),O50069_ARATH/63-108)),O65366_ANTMA/59-104),Q01073_KLULA/213-264),(((((O24251_PETCR/16-68,(((REB1_SCHPO/313-357,(Q12457_YEAST/345-389,REB1_KLULA/338-382)),P78793_SCHPO/32-81),YD3A_SCHPO/55-105)),TERF1_CRIGR/380-428),TERF2_MOUSE/442-490),(P70413_MOUSE/224-268,Q62187_MOUSE/564-608)),O22895_ARATH/127-173)),(((O62208_CAEEL/409-455,((CDC5_SCHPO/6-52,Q21119_CAEEL/8-54),CEF1_YEAST/10-56)),(O65366_ANTMA/4-53,(O62208_CAEEL/356-402,BAS1_YEAST/169-214))),((MYB1_NEUCR/9-55,Q00658_EMENI/7-54),((O65263_ARATH/69-118,(O65528_ARATH/26-72,((MYBA_CHICK/87-133,O01719_STRPU/93-139),(MYBH_DICDI/201-247,MYB_DROME/136-182)))),(((((MYB21_ARATH/22-69,Q39550_CRAPL/29-76),((O50069_ARATH/10-57,Q39028_ARATH/22-69),(O49020_GOSHI/22-69,P92986_ARATH/20-67))),GL1_ARATH/16-63),(((O04109_ORYSA/14-61,(((((MYBC_MAIZE/14-61,O23891_ORYSA/14-61),Q40920_PICMA/14-61),MYBP_MAIZE/14-61),((((Q39153_ARATH/14-61,Q96463_HORVU/12-59),(MYB1_MAIZE/16-63,O64534_ARATH/16-96)),((MYB2_PHYPA/14-61,(O49649_ARATH/14-61,Q43597_ORYSA/14-61)),O49744_ARATH/14-61)),(O23892_ORYSA/22-69,Q38850_ARATH/25-72))),((((O49017_GOSHI/15-62,O49018_GOSHI/14-61),Q9ZTC3_ARATH/10-57),((MYB3_HORVU/16-63,Q43524_LYCES/14-61),P81394_ANTMA/14-61)),(((MYB1_HORVU/14-61,O23618_ARATH/15-62),O04141_ORYSA/14-61),(Q38739_ANTMA/14-61,(O49765_ARATH/14-61,O49782_ARATH/15-62)))))),(O23893_ORYSA/43-90,O80883_ARATH/20-67)),O49538_ARATH/14-62)),(((Q42575_ARATH/55-101,O22179_ARATH/13-59),O04192_ARATH/50-96),Q9ZTD7_ARATH/6-52)))))),((((P70413_MOUSE/273-329,REB1_SCHPO/365-418),(O15816_DICDI/480-525,(O48523_ARATH/13-66,O64877_ARATH/47-101))),((BAS1_YEAST/116-161,((CDC5_SCHPO/58-102,CEF1_YEAST/62-106),O62208_CAEEL/301-350)),(ETA2_SCHPO/327-371,O15816_DICDI/427-474))),((MYBH_DICDI/149-195,(Q9ZPU2_ARATH/40-86,O65263_ARATH/12-63)),((YBF4_YEAST/75-120,DOT6_YEAST/72-117),((MYBB_CHICK/31-77,MYBB_XENLA/31-77),(((O01719_STRPU/41-87,MYB_DROME/85-130),((MYBA_CHICK/35-81,MYB_BOVIN/40-86),MYBA_XENLA/35-80)),O64502_ARATH/30-76)))))),TBF1_YEAST/409-456),((Q61866_MOUSE/451-507,(DNJC1_MOUSE/492-541,(Q94216_CAEEL/533-582,YMA9_CAEEL/215-264))),((((YEPA_SCHPO/247-292,Q9VF03_DROME/652-697),O22811_ARATH/225-270),(O13788_SCHPO/290-335,RSC8_YEAST/312-358)),SWI3_YEAST/524-569))),(Q19953_CAEEL/77-125,((ADA2_YEAST/62-108,O23486_ARATH/88-134),ADA2_HUMAN/72-118))),(((O04605_ARATH/59-104,O81713_ARATH/24-69),(Q9XEB2_ARATH/16-67,(((((((Q9LTH4_ARATH/143-193,(ARR18_ARATH/196-246,ARR11_ARATH/195-246)),ARR20_ARATH/213-268),Q9FTT8_ORYSA/220-267),(Q9FPE8_ARATH/214-262,Q9FX84_ARATH/197-245)),(Q9ZPZ8_ARATH/88-139,(((Q9LSH8_ARATH/243-294,Q9M0H0_ARATH/227-278),Q9FG27_ARATH/193-244),((Q9S807_CHLRE/189-240,Q9SJW0_ARATH/17-68),(Q9FH42_ARATH/25-76,(Q9FK47_ARATH/47-98,(Q9LRN5_ARATH/43-110,Q9SVP8_ARATH/39-98))))))),((O82801_ARATH/56-104,Q9SIZ5_ARATH/84-135),Q9MA23_ARATH/25-76)),Q9FJV5_ARATH/107-158))),O04322_ARATH/118-165)),SNT1_YEAST/889-934),SPR1_CAEEL/483-528),(O94481_SCHPO/365-410,TFC5_YEAST/417-462)),YDPA_SCHPO/71-116),(((YGN1_YEAST/557-602,(Q20733_CAEEL/562-607,(O75046_HUMAN/153-199,O42194_XENLA/274-320))),O80435_ARATH/19-68),(Q15044_HUMAN/103-148,GEI8_CAEEL/215-260))),(NCOR1_HUMAN/625-670,Q15044_HUMAN/294-339)),EGL27_CAEEL/334-380),(MTA1_HUMAN/285-331,O61907_CAEEL/481-527)),(SNT1_YEAST/670-716,YDBJ_SCHPO/248-293)),NCOR2_HUMAN/429-474,NCOR1_HUMAN/437-482);
((((((((((((((((((((((((((((O23618_ARATH/68-113:0.13900,(MYB1_MAIZE/69-114:0.10229,(O04140_ORYSA/67-112:0.05232,O04108_ORYSA/67-112:0.21093):0.12875):0.07310):0.00000,(((((O22179_ARATH/65-110:0.33316,((MYBH_DICDI/253-298:0.16868,((MYBA_CHICK/139-184:0.17778,MYB_DROME/188-233:0.17367):0.14285,(O65263_ARATH/124-169:0.27276,O65528_ARATH/78-123:0.18315):0.16900):0.00720):0.16490,Q42575_ARATH/107-152:0.07691):0.00000):0.07333,((Q9ZTD6_ARATH/3-48:0.28792,Q9ZTD7_ARATH/58-103:0.00000):0.14017,O64502_ARATH/82-127:0.77916):0.23543):0.11535,O04192_ARATH/102-147:0.14291):0.19160,(MYB1_NEUCR/61-106:0.35317,Q00658_EMENI/60-105:0.44356):0.57340):0.05077,Q9ZTE9_ARATH/14-59:0.20268):0.10647):0.05299,Q9ZTC8_ARATH/3-48:0.16720):0.01345,(O64399_ARATH/67-112:0.20319,(O49765_ARATH/67-112:0.15809,O49782_ARATH/68-113:0.21375):0.04813):0.05781):0.05631,((O49780_ARATH/14-59:0.28836,O04109_ORYSA/67-112:0.28427):0.03564,Q02992_PETHY/67-112:0.06926):0.04758):0.02976,((O22264_ARATH/67-112:0.10602,O49019_GOSHI/67-112:0.13082):0.04819,(((Q9ZQS3_PERFR/10-55:0.15106,(((Q9ZTC3_ARATH/63-108:0.20043,MYBC_MAIZE/67-112:0.14550):0.00000,GL1_ARATH/69-114:0.17338):0.05153,Q39156_ARATH/35-80:0.25826):0.01944):0.05315,O22059_ARATH/35-80:0.84753):0.00000,MYB1_HORVU/67-112:0.10771):0.08678):0.08506):0.01120,(Q43524_LYCES/67-112:0.20643,Q9ZR24_PERFR/33-78:0.17226):0.07587):0.08671,(((O04110_ORYSA/67-112:0.19928,O65720_ARATH/14-59:0.22386):0.03263,P81394_ANTMA/67-112:0.16879):0.06858,(((((O49538_ARATH/68-113:0.05101,Q9ZTE4_ARATH/14-59:0.22054):0.15816,O49770_ARATH/14-59:0.39634):0.11739,MYB2_PHYPA/67-112:0.07823):0.08426,((O23893_ORYSA/96-141:0.12938,O65898_ARATH/13-58:0.15538):0.02832,O80883_ARATH/73-118:0.21767):0.09611):0.05725,(MYB3_HORVU/69-114:0.19440,MYB86_ARATH/67-112:0.12078):0.12806):0.06569):0.07220):0.07589,((MYB21_ARATH/75-120:0.07588,O49020_GOSHI/75-120:0.13505):0.13007,O50069_ARATH/63-108:0.13947):0.07993):0.21113,O65366_ANTMA/59-104:0.82541):0.26990,Q01073_KLULA/213-264:0.80974):0.06432,(((((O24251_PETCR/16-68:0.43486,(((REB1_SCHPO/313-357:0.40566,(Q12457_YEAST/345-389:0.11408,REB1_KLULA/338-382:0.14663):0.37894):0.28649,P78793_SCHPO/32-81:0.67801):0.21172,YD3A_SCHPO/55-105:0.44749):0.22060):0.31869,TERF1_CRIGR/380-428:0.17438):0.19246,TERF2_MOUSE/442-490:0.20936):0.28220,(P70413_MOUSE/224-268:0.13847,Q62187_MOUSE/564-608:0.92143):0.61153):0.08695,O22895_ARATH/127-173:1.19363):0.19757):0.11344,(((O62208_CAEEL/409-455:0.87198,((CDC5_SCHPO/6-52:0.17319,Q21119_CAEEL/8-54:0.07683):0.24657,CEF1_YEAST/10-56:0.14830):0.34709):0.22350,(O65366_ANTMA/4-53:0.58966,(O62208_CAEEL/356-402:0.41351,BAS1_YEAST/169-214:0.93733):0.08769):0.11658):0.09863,((MYB1_NEUCR/9-55:0.38559,Q00658_EMENI/7-54:0.24879):0.30218,((O65263_ARATH/69-118:0.36381,(O65528_ARATH/26-72:0.16910,((MYBA_CHICK/87-133:0.02087,O01719_STRPU/93-139:0.23205):0.05754,(MYBH_DICDI/201-247:0.14564,MYB_DROME/136-182:0.21636):0.06360):0.09130):0.07240):0.07686,(((((MYB21_ARATH/22-69:0.09516,Q39550_CRAPL/29-76:0.15296):0.13083,((O50069_ARATH/10-57:0.38897,Q39028_ARATH/22-69:0.01504):0.13840,(O49020_GOSHI/22-69:0.17721,P92986_ARATH/20-67:0.19343):0.07886):0.06057):0.16270,GL1_ARATH/16-63:0.19640):0.07730,(((O04109_ORYSA/14-61:0.20299,(((((MYBC_MAIZE/14-61:0.27016,O23891_ORYSA/14-61:0.15427):0.07593,Q40920_PICMA/14-61:0.16974):0.07375,MYBP_MAIZE/14-61:0.19895):0.06795,((((Q39153_ARATH/14-61:0.19056,Q96463_HORVU/12-59:0.33683):0.06210,(MYB1_MAIZE/16-63:0.09921,O64534_ARATH/16-96:0.18557):0.07564):0.04346,((MYB2_PHYPA/14-61:0.12966,(O49649_ARATH/14-61:0.08744,Q43597_ORYSA/14-61:0.27521):0.12631):0.12951,O49744_ARATH/14-61:0.00000):0.07583):0.09591,(O23892_ORYSA/22-69:0.28084,Q38850_ARATH/25-72:0.03053):0.14531):0.00000):0.04730,((((O49017_GOSHI/15-62:0.15557,O49018_GOSHI/14-61:0.12655):0.21219,Q9ZTC3_ARATH/10-57:0.37728):0.18993,((MYB3_HORVU/16-63:0.17681,Q43524_LYCES/14-61:0.20404):0.23799,P81394_ANTMA/14-61:0.31656):0.04954):0.00000,(((MYB1_HORVU/14-61:0.21909,O23618_ARATH/15-62:0.12837):0.05014,O04141_ORYSA/14-61:0.12459):0.05511,(Q38739_ANTMA/14-61:0.19711,(O49765_ARATH/14-61:0.16368,O49782_ARATH/15-62:0.11555):0.09640):0.07921):0.06708):0.06873):0.05412):0.08751,(O23893_ORYSA/43-90:0.18702,O80883_ARATH/20-67:0.13855):0.16876):0.11330,O49538_ARATH/14-62:0.34348):0.07073):0.44930,(((Q42575_ARATH/55-101:0.19622,O22179_ARATH/13-59:0.10758):0.04500,O04192_ARATH/50-96:0.24488):0.16960,Q9ZTD7_ARATH/6-52:0.34988):0.05259):0.27880):0.07055):0.11252):0.04884):0.04637,((((P70413_MOUSE/273-329:0.61932,REB1_SCHPO/365-418:0.60403):0.31389,(O15816_DICDI/480-525:0.30739,(O48523_ARATH/13-66:0.04452,O64877_ARATH/47-101:0.47515):0.94817):0.26182):0.31157,((BAS1_YEAST/116-161:0.50102,((CDC5_SCHPO/58-102:0.11527,CEF1_YEAST/62-106:0.49563):0.36284,O62208_CAEEL/301-350:0.73992):0.27917):0.00000,(ETA2_SCHPO/327-371:0.95874,O15816_DICDI/427-474:0.21672):0.46457):0.12312):0.10202,((MYBH_DICDI/149-195:0.16605,(Q9ZPU2_ARATH/40-86:0.22700,O65263_ARATH/12-63:0.62823):0.10751):0.18149,((YBF4_YEAST/75-120:0.13351,DOT6_YEAST/72-117:0.11091):0.98291,((MYBB_CHICK/31-77:0.23731,MYBB_XENLA/31-77:0.19723):0.12893,(((O01719_STRPU/41-87:0.30021,MYB_DROME/85-130:0.46146):0.07457,((MYBA_CHICK/35-81:0.13483,MYB_BOVIN/40-86:0.10710):0.11692,MYBA_XENLA/35-80:0.21606):0.05671):0.07436,O64502_ARATH/30-76:0.76685):0.01149):0.12701):0.04409):0.04780):0.21558):0.43427,TBF1_YEAST/409-456:1.24901):0.11428,((Q61866_MOUSE/451-507:0.84604,(DNJC1_MOUSE/492-541:0.36301,(Q94216_CAEEL/533-582:0.50706,YMA9_CAEEL/215-264:0.26135):0.15391):0.31432):0.10796,((((YEPA_SCHPO/247-292:0.32335,Q9VF03_DROME/652-697:0.26905):0.04326,O22811_ARATH/225-270:0.59938):0.17534,(O13788_SCHPO/290-335:0.40965,RSC8_YEAST/312-358:0.30822):0.06314):0.24866,SWI3_YEAST/524-569:0.34375):0.27114):0.35178):0.06967,(Q19953_CAEEL/77-125:0.89849,((ADA2_YEAST/62-108:0.39597,O23486_ARATH/88-134:0.33537):0.21369,ADA2_HUMAN/72-118:0.49263):0.09285):0.26088):0.17400,(((O04605_ARATH/59-104:0.30122,O81713_ARATH/24-69:0.14941):0.11156,(Q9XEB2_ARATH/16-67:0.19142,(((((((Q9LTH4_ARATH/143-193:0.19835,(ARR18_ARATH/196-246:0.06115,ARR11_ARATH/195-246:0.17907):0.22702):0.06751,ARR20_ARATH/213-268:0.32111):0.00000,Q9FTT8_ORYSA/220-267:0.19409):0.15895,(Q9FPE8_ARATH/214-262:0.15227,Q9FX84_ARATH/197-245:0.07942):0.23717):0.11665,(Q9ZPZ8_ARATH/88-139:0.36041,(((Q9LSH8_ARATH/243-294:0.10952,Q9M0H0_ARATH/227-278:0.14135):0.03975,Q9FG27_ARATH/193-244:0.28413):0.05450,((Q9S807_CHLRE/189-240:0.12934,Q9SJW0_ARATH/17-68:0.13053):0.02006,(Q9FH42_ARATH/25-76:0.14975,(Q9FK47_ARATH/47-98:0.12807,(Q9LRN5_ARATH/43-110:0.06405,Q9SVP8_ARATH/39-98:0.10528):0.10776):0.07512):0.07390):0.03693):0.06635):0.00000):0.15811,((O82801_ARATH/56-104:0.13615,Q9SIZ5_ARATH/84-135:0.08469):0.07442,Q9MA23_ARATH/25-76:0.20263):0.05205):0.06111,Q9FJV5_ARATH/107-158:0.16624):0.17310):1.06545):0.11815,O04322_ARATH/118-165:0.55283):0.12328):0.27652,SNT1_YEAST/889-934:0.78051):0.19611,SPR1_CAEEL/483-528:0.97519):0.26830,(O94481_SCHPO/365-410:0.30235,TFC5_YEAST/417-462:0.38061):0.64068):0.01568,YDPA_SCHPO/71-116:0.66082):0.28267,(((YGN1_YEAST/557-602:1.08690,(Q20733_CAEEL/562-607:0.57413,(O75046_HUMAN/153-199:0.58238,O42194_XENLA/274-320:0.45607):0.22833):0.11681):0.03508,O80435_ARATH/19-68:0.68677):0.18028,(Q15044_HUMAN/103-148:0.26054,GEI8_CAEEL/215-260:1.03484):0.22955):0.12819):0.26279,(NCOR1_HUMAN/625-670:0.50752,Q15044_HUMAN/294-339:0.41795):0.42347):0.25878,EGL27_CAEEL/334-380:0.75837):0.05061,(MTA1_HUMAN/285-331:0.15732,O61907_CAEEL/481-527:0.36721):0.34527):0.65556,(SNT1_YEAST/670-716:0.55225,YDBJ_SCHPO/248-293:0.30884):0.45051):0.09541,NCOR2_HUMAN/429-474:0.16720,NCOR1_HUMAN/437-482:0.12028);