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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00234 phylogeny
for nucleotide alignment


 
(((((((((((((((((((((((((((((((((Q42848_HORVU/33-118,NLTP4_ORYSA/10-95),(((NLT41_HORVU/29-111,NLTP3_HORVU/29-114),NLTP8_HORVU/29-111),NLTP1_ORYSA/28-112)),(NLTP1_HORVU/29-113,NLTP1_WHEAT/26-110)),NLTP5_ORYSA/28-113),Q9SES6_HORVU/32-117),SCA_LILLO/25-109),NLTP3_PRUDU/33-119),O24440_PHAVU/29-112),(NLTP_GERHY/28-112,NLTP_HELAN/28-112)),(NLTP6_GOSHI/32-116,NLTP1_GOSHI/27-112)),NLTP_DAUCA/30-116),(((((Q9SDS4_CAPAN/19-102,NLTP1_LYCES/27-110),O24038_LYCPN/27-110),Q9SDS2_CAPAN/27-110),NLTP1_TOBAC/27-110),NLTP_CICAR/27-111)),(NLTP_PINTA/34-119,(NLTP_BETVU/29-113,NLTP_SPIOL/30-113))),((Q39332_BRANA/28-112,Q9ZSL7_BRANA/27-108),(((Q9ZUK6_ARATH/29-118,(NLTP1_BRANA/29-113,NLTPA_BRAOT/29-114)),NLTP1_ARATH/29-114),NLTP5_ARATH/29-114))),((O24355_SILLA/25-110,Q40453_TOBAC/25-114),NLTP6_AMBAR/30-113)),(NLT21_PARJU/35-121,(NLTPC_RICCO/28-112,NLTP_STRHE/10-89))),(O24485_PINRA/36-122,(Q9ZPW9_ARATH/28-112,O49116_ARATH/29-125))),((O65561_ARATH/29-103,O81872_ARATH/32-107),O24101_MEDTR/31-102)),(AMP1_ALLCE/31-116,((Q40335_MEDSA/84-165,((((Q9SU32_ARATH/34-115,(O65368_ARATH/32-112,O81318_ARATH/317-399)),((Q39176_ARATH/85-167,Q9S7U3_ARATH/46-128),((O82439_ARATH/25-107,Q9SUX3_ARATH/50-132),O65369_ARATH/55-137))),((Q41125_PHAVU/45-126,Q42044_ARATH/52-133),Q39100_ARATH/48-126)),((((14KD_DAUCA/54-136,Q43522_LYCES/127-207),(Q9ST25_MAIZE/51-132,(Q40721_ORYSA/52-133,(((((P93274_MALDO/2-73,(O23370_ARATH/181-264,((P93705_DAUCA/264-345,Q06763_SOYBN/68-149),((Q96232_ASPOF/101-182,Q9SKI0_ARATH/208-289),((PRF1_LYCES/261-343,Q9SET1_ARATH/222-304),Q9SXE7_ARATH/212-293))))),Q41848_MAIZE/215-296),P93611_WHEAT/84-166),Q42474_ORYSA/65-146),CCDP_MAIZE/48-127)))),(Q42487_POPNI/58-140,Q9ZTW2_FRAAN/73-155)),Q39574_CATRO/55-137))),((Q9SUV8_ARATH/28-104,Q9SUW7_ARATH/37-117),Q9SUX0_ARATH/37-116)))),(((((((((Q40631_ORYSA/30-95,(NLTP2_HORVU/37-102,O81135_HORVU/27-92)),Q9XF30_ORYSA/41-111),P93191_HORVU/31-96),((Q41378_9ASTR/24-89,Q42392_ZINEL/30-95),Q42158_ARATH/29-94)),O64431_BRACM/21-86),NLTP_VIGUN/34-99),Q9STH5_ARATH/42-113),Q9SHA0_ARATH/27-109),(Q43496_LYCES/28-101,(Q9SRS1_ARATH/32-105,Q9SUZ2_ARATH/48-121)))),((O49644_ARATH/39-110,O49648_ARATH/34-105),(((Q9SI70_ARATH/29-101,O64864_ARATH/36-113),Q9SA59_ARATH/25-103),(O22272_ARATH/48-125,(Q9ZQI8_ARATH/27-105,Q9ZVC7_ARATH/40-120))))),O22110_PICAB/25-104),(O24486_PINRA/39-97,(MC1_PINRA/28-88,Q41126_PHAVU/30-102))),(MEN8_SILLA/38-98,((108_LYCES/35-99,(A9_ARATH/27-87,A9_BRANA/32-92)),FIL1_ANTMA/31-90))),LIM1_LILLO/29-88),(YY1_ORYSA/31-94,ZM33_MAIZE/45-108)),Q9SBW9_MAIZE/43-101),((((((2SS5_HELAN/53-148,Q39928_HELAN/52-143),(((2SS1_ARATH/59-153,2SS2_ARATH/58-158),(Q41168_RAPSA/29-141,(2SSE_BRANA/60-174,2SS1_BRANA/16-122))),2SS5_HELAN/190-290)),(((2SS_BEREX/40-137,(P93198_9ROSI/39-132,2SS_RICCO/162-256)),(2SS8_HELAN/49-139,Q39787_GOSHI/36-131)),Q9XHP1_SESIN/54-141)),(((2SS_SOYBN/43-152,Q9SQG5_ARAHY/31-120),2SS_RICCO/61-155),Q39649_9ROSI/55-139)),((((GLU2_MAIZE/128-213,Q00318_COILA/103-188),ZEB2_MAIZE/86-172),((PRO2_ORYSA/47-143,PRO7_ORYSA/41-137),(((Q09071_AVESA/48-166,(AVE3_AVESA/69-210,Q09072_AVESA/74-212)),(HOG1_HORVU/166-288,(Q41320_SECCE/55-178,((GDBX_WHEAT/171-285,Q41543_WHEAT/137-262),GDB2_WHEAT/184-310)))),((HOR1_HORVU/143-282,((GDB1_WHEAT/134-288,GDB3_WHEAT/87-228),(GLTA_WHEAT/197-341,P93794_WHEAT/195-344))),((((GDA0_WHEAT/146-275,GDA8_WHEAT/46-175),GDA5_WHEAT/152-306),GDA6_WHEAT/155-283),GDA2_WHEAT/143-280))))),(GL19_ORYSA/48-178,PRO1_ORYSA/43-134))),((((P93513_9POAL/63-154,Q9SC06_TRIMO/34-125),PUIB_WHEAT/50-140),PUIA_WHEAT/48-138),(((O64930_PSEMZ/43-158,O64929_PSEMZ/42-147),(O64931_PSEMZ/44-155,(2SSL_PICGL/52-156,(Q40997_PINST/58-160,(Q40996_PINST/48-156,Q40995_PINST/69-175))))),O81410_PICGL/53-146)))),(IAA1_WHEAT/6-115,(IAA1_HORVU/20-131,(((Q40654_ORYSA/41-149,Q40652_ORYSA/41-153),(Q40655_ORYSA/42-152,O49178_ORYSA/42-149)),RA17_ORYSA/39-149)))),ITRF_MAIZE/34-143),IAAE_HORVU/29-137),(IA16_WHEAT/30-134,IA03_WHEAT/43-159)),IA01_WHEAT/30-140,IAAA_HORVU/30-140);
(((((((((((((((((((((((((((((((((Q42848_HORVU/33-118:0.26030,NLTP4_ORYSA/10-95:0.20600):0.08547,(((NLT41_HORVU/29-111:0.04454,NLTP3_HORVU/29-114:0.10980):0.03341,NLTP8_HORVU/29-111:0.17345):0.12711,NLTP1_ORYSA/28-112:0.08639):0.07457):0.06573,(NLTP1_HORVU/29-113:0.04926,NLTP1_WHEAT/26-110:0.11136):0.19893):0.03541,NLTP5_ORYSA/28-113:0.24643):0.04272,Q9SES6_HORVU/32-117:0.29694):0.12940,SCA_LILLO/25-109:0.28248):0.08123,NLTP3_PRUDU/33-119:0.27601):0.04667,O24440_PHAVU/29-112:0.21805):0.08948,(NLTP_GERHY/28-112:0.24064,NLTP_HELAN/28-112:0.13797):0.07498):0.05425,(NLTP6_GOSHI/32-116:0.18084,NLTP1_GOSHI/27-112:0.04138):0.22298):0.03832,NLTP_DAUCA/30-116:0.30326):0.06860,(((((Q9SDS4_CAPAN/19-102:0.29707,NLTP1_LYCES/27-110:0.07042):0.07026,O24038_LYCPN/27-110:0.12115):0.04035,Q9SDS2_CAPAN/27-110:0.18342):0.06459,NLTP1_TOBAC/27-110:0.08919):0.16544,NLTP_CICAR/27-111:0.24989):0.10681):0.02820,(NLTP_PINTA/34-119:0.59477,(NLTP_BETVU/29-113:0.13906,NLTP_SPIOL/30-113:0.11291):0.07072):0.05843):0.09953,((Q39332_BRANA/28-112:0.34187,Q9ZSL7_BRANA/27-108:0.26246):0.06629,(((Q9ZUK6_ARATH/29-118:0.21196,(NLTP1_BRANA/29-113:0.13193,NLTPA_BRAOT/29-114:0.07606):0.03648):0.02111,NLTP1_ARATH/29-114:0.07657):0.10338,NLTP5_ARATH/29-114:0.27354):0.12192):0.06197):0.19036,((O24355_SILLA/25-110:0.52917,Q40453_TOBAC/25-114:0.29574):0.14512,NLTP6_AMBAR/30-113:0.37061):0.15036):0.05002,(NLT21_PARJU/35-121:0.35194,(NLTPC_RICCO/28-112:0.15723,NLTP_STRHE/10-89:0.33021):0.30600):0.20285):0.06533,(O24485_PINRA/36-122:0.67972,(Q9ZPW9_ARATH/28-112:0.40599,O49116_ARATH/29-125:0.53977):0.07641):0.05738):0.09808,((O65561_ARATH/29-103:0.47659,O81872_ARATH/32-107:0.44919):0.16857,O24101_MEDTR/31-102:0.51138):0.19830):0.07259,(AMP1_ALLCE/31-116:0.90879,((Q40335_MEDSA/84-165:0.21597,((((Q9SU32_ARATH/34-115:0.39784,(O65368_ARATH/32-112:0.24752,O81318_ARATH/317-399:0.30379):0.06361):0.04968,((Q39176_ARATH/85-167:0.17256,Q9S7U3_ARATH/46-128:0.15663):0.05089,((O82439_ARATH/25-107:0.19838,Q9SUX3_ARATH/50-132:0.20976):0.07060,O65369_ARATH/55-137:0.18281):0.04390):0.04960):0.06087,((Q41125_PHAVU/45-126:0.22280,Q42044_ARATH/52-133:0.18059):0.03664,Q39100_ARATH/48-126:0.21080):0.08551):0.03220,((((14KD_DAUCA/54-136:0.12256,Q43522_LYCES/127-207:0.32477):0.07627,(Q9ST25_MAIZE/51-132:0.19586,(Q40721_ORYSA/52-133:0.08285,(((((P93274_MALDO/2-73:0.25529,(O23370_ARATH/181-264:0.14651,((P93705_DAUCA/264-345:0.21639,Q06763_SOYBN/68-149:0.17886):0.04788,((Q96232_ASPOF/101-182:0.20944,Q9SKI0_ARATH/208-289:0.19644):0.11151,((PRF1_LYCES/261-343:0.18400,Q9SET1_ARATH/222-304:0.14893):0.08867,Q9SXE7_ARATH/212-293:0.24046):0.04573):0.09851):0.10691):0.06845):0.15789,Q41848_MAIZE/215-296:0.16044):0.14283,P93611_WHEAT/84-166:0.26403):0.14812,Q42474_ORYSA/65-146:0.11878):0.05609,CCDP_MAIZE/48-127:0.15164):0.07637):0.09688):0.20321):0.07370,(Q42487_POPNI/58-140:0.11625,Q9ZTW2_FRAAN/73-155:0.15910):0.06349):0.03620,Q39574_CATRO/55-137:0.18903):0.06777):0.08367):0.12830,((Q9SUV8_ARATH/28-104:0.31183,Q9SUW7_ARATH/37-117:0.23279):0.29380,Q9SUX0_ARATH/37-116:0.38549):0.05106):0.29993):0.16269):0.10837,(((((((((Q40631_ORYSA/30-95:0.13176,(NLTP2_HORVU/37-102:0.13921,O81135_HORVU/27-92:0.22493):0.05445):0.13050,Q9XF30_ORYSA/41-111:0.31026):0.09481,P93191_HORVU/31-96:0.22086):0.15501,((Q41378_9ASTR/24-89:0.25420,Q42392_ZINEL/30-95:0.16655):0.17550,Q42158_ARATH/29-94:0.18749):0.07307):0.07323,O64431_BRACM/21-86:0.27946):0.10754,NLTP_VIGUN/34-99:0.22485):0.36778,Q9STH5_ARATH/42-113:0.52924):0.05617,Q9SHA0_ARATH/27-109:0.71609):0.03393,(Q43496_LYCES/28-101:0.36281,(Q9SRS1_ARATH/32-105:0.19561,Q9SUZ2_ARATH/48-121:0.17831):0.11040):0.40654):0.12585):0.13675,((O49644_ARATH/39-110:0.25614,O49648_ARATH/34-105:0.31895):0.43491,(((Q9SI70_ARATH/29-101:0.48506,O64864_ARATH/36-113:0.43562):0.04129,Q9SA59_ARATH/25-103:0.61563):0.09190,(O22272_ARATH/48-125:0.53896,(Q9ZQI8_ARATH/27-105:0.23422,Q9ZVC7_ARATH/40-120:0.53732):0.06583):0.14000):0.08479):0.07777):0.17286,O22110_PICAB/25-104:0.43506):0.16723,(O24486_PINRA/39-97:0.43486,(MC1_PINRA/28-88:0.39454,Q41126_PHAVU/30-102:0.53333):0.09937):0.15517):0.16713,(MEN8_SILLA/38-98:0.21833,((108_LYCES/35-99:0.30192,(A9_ARATH/27-87:0.06908,A9_BRANA/32-92:0.10017):0.41617):0.03820,FIL1_ANTMA/31-90:0.23757):0.08753):0.05707):0.26760,LIM1_LILLO/29-88:0.24740):0.22821,(YY1_ORYSA/31-94:0.12570,ZM33_MAIZE/45-108:0.21205):0.12742):0.07915,Q9SBW9_MAIZE/43-101:0.14860):0.23731,((((((2SS5_HELAN/53-148:0.07107,Q39928_HELAN/52-143:0.09978):0.33198,(((2SS1_ARATH/59-153:0.04416,2SS2_ARATH/58-158:0.16447):0.07966,(Q41168_RAPSA/29-141:0.04643,(2SSE_BRANA/60-174:0.09858,2SS1_BRANA/16-122:0.15529):0.02304):0.17002):0.47168,2SS5_HELAN/190-290:0.38300):0.03930):0.12677,(((2SS_BEREX/40-137:0.36211,(P93198_9ROSI/39-132:0.25526,2SS_RICCO/162-256:0.52411):0.08466):0.05924,(2SS8_HELAN/49-139:0.50907,Q39787_GOSHI/36-131:0.55815):0.12642):0.11142,Q9XHP1_SESIN/54-141:0.43473):0.08076):0.09472,(((2SS_SOYBN/43-152:0.26466,Q9SQG5_ARAHY/31-120:0.33103):0.31841,2SS_RICCO/61-155:0.61949):0.07452,Q39649_9ROSI/55-139:0.32790):0.08472):0.14773,((((GLU2_MAIZE/128-213:0.06911,Q00318_COILA/103-188:0.08688):0.06164,ZEB2_MAIZE/86-172:0.04634):0.23986,((PRO2_ORYSA/47-143:0.15302,PRO7_ORYSA/41-137:0.03247):0.49002,(((Q09071_AVESA/48-166:0.11909,(AVE3_AVESA/69-210:0.06653,Q09072_AVESA/74-212:0.07219):0.07107):0.02937,(HOG1_HORVU/166-288:0.15669,(Q41320_SECCE/55-178:0.24207,((GDBX_WHEAT/171-285:0.05744,Q41543_WHEAT/137-262:0.04173):0.01076,GDB2_WHEAT/184-310:0.05741):0.03568):0.04958):0.11535):0.04756,((HOR1_HORVU/143-282:0.08224,((GDB1_WHEAT/134-288:0.05593,GDB3_WHEAT/87-228:0.02541):0.01445,(GLTA_WHEAT/197-341:0.01745,P93794_WHEAT/195-344:0.00295):0.06733):0.01554):0.25852,((((GDA0_WHEAT/146-275:0.01110,GDA8_WHEAT/46-175:0.10062):0.02086,GDA5_WHEAT/152-306:0.03660):0.01201,GDA6_WHEAT/155-283:0.15318):0.00616,GDA2_WHEAT/143-280:0.03019):0.26065):0.02428):0.25340):0.06742):0.24691,(GL19_ORYSA/48-178:0.51470,PRO1_ORYSA/43-134:0.38544):0.15088):0.09033):0.11460,((((P93513_9POAL/63-154:0.11542,Q9SC06_TRIMO/34-125:0.14461):0.31453,PUIB_WHEAT/50-140:0.20322):0.06465,PUIA_WHEAT/48-138:0.21170):0.37146,(((O64930_PSEMZ/43-158:0.16402,O64929_PSEMZ/42-147:0.15145):0.02552,(O64931_PSEMZ/44-155:0.14567,(2SSL_PICGL/52-156:0.08731,(Q40997_PINST/58-160:0.17840,(Q40996_PINST/48-156:0.21787,Q40995_PINST/69-175:0.11102):0.04092):0.03277):0.02253):0.02723):0.08603,O81410_PICGL/53-146:0.11570):0.44056):0.06850):0.26786):0.20625,(IAA1_WHEAT/6-115:0.60149,(IAA1_HORVU/20-131:0.23142,(((Q40654_ORYSA/41-149:0.11619,Q40652_ORYSA/41-153:0.09059):0.06796,(Q40655_ORYSA/42-152:0.00390,O49178_ORYSA/42-149:0.40300):0.03352):0.01984,RA17_ORYSA/39-149:0.10366):0.12362):0.05335):0.34972):0.33830,ITRF_MAIZE/34-143:0.09191):0.09262,IAAE_HORVU/29-137:0.39552):0.32835,(IA16_WHEAT/30-134:0.10384,IA03_WHEAT/43-159:0.47307):0.07519):0.15009,IA01_WHEAT/30-140:0.06773,IAAA_HORVU/30-140:0.09841);