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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00234 phylogeny
for amino acid alignment


 
((((((((((((((((((((NLTP_HELAN/28-112,O24440_PHAVU/29-112),((((((Q39332_BRANA/28-112,((NLTPA_BRAOT/29-114,((NLTP1_BRANA/29-113,NLTP5_ARATH/29-114),NLTP1_ARATH/29-114)),Q9ZUK6_ARATH/29-118)),Q9ZSL7_BRANA/27-108),SCA_LILLO/25-109),NLTP3_PRUDU/33-119),(NLTP6_GOSHI/32-116,NLTP1_GOSHI/27-112)),((NLTP_DAUCA/30-116,NLTP_GERHY/28-112),NLTP1_PRUAR/3-87))),(NLTP_CICAR/27-111,(((NLTP1_TOBAC/27-110,O24038_LYCPN/27-110),((Q9SDS4_CAPAN/19-102,Q9SDS2_CAPAN/27-110),NLTP1_LYCES/27-110)),(NLTP_BETVU/29-113,NLTP_SPIOL/30-113)))),(((NLTP_AMACA/4-90,Q9ZPW9_ARATH/28-112),((NLTP_ELECO/4-90,(NLTP1_ORYSA/28-112,((NLTP1_HORVU/29-113,NLTP1_WHEAT/26-110),NLTP4_ORYSA/10-95))),(NLTP8_HORVU/29-111,(NLT41_HORVU/29-111,(Q42848_HORVU/33-118,NLTP3_HORVU/29-114))))),NLTP5_ORYSA/28-113)),(NLTPA_RICCO/3-88,NLTPB_RICCO/3-88)),NLTP_PINTA/34-119),Q9SES6_HORVU/32-117),((((NLTPC_RICCO/28-112,NLTP_STRHE/10-89),((NLT11_PARJU/4-91,NLT21_PARJU/35-121),O49116_ARATH/29-125)),NLTP6_AMBAR/30-113),((O24355_SILLA/25-110,Q40453_TOBAC/25-114),O24485_PINRA/36-122))),(O49644_ARATH/39-110,O49648_ARATH/34-105)),(Q41126_PHAVU/30-102,(O24101_MEDTR/31-102,(O65561_ARATH/29-103,O81872_ARATH/32-107)))),(((((((Q41378_9ASTR/24-89,Q42392_ZINEL/30-95),Q42158_ARATH/29-94),NLTP2_PRUAR/3-68),(P93191_HORVU/31-96,(Q9XF30_ORYSA/41-111,(Q40631_ORYSA/30-95,(O81135_HORVU/27-92,NLTP2_HORVU/37-102))))),O64431_BRACM/21-86),((((Q9SUV8_ARATH/28-104,Q9SUW7_ARATH/37-117),(Q9SUX0_ARATH/37-116,(HPSE_SOYBN/8-77,((((O81318_ARATH/317-399,Q9ST25_MAIZE/51-132),(Q39574_CATRO/55-137,(Q40335_MEDSA/84-165,(Q41125_PHAVU/45-126,Q42044_ARATH/52-133)))),(((O65368_ARATH/32-112,(Q9SU32_ARATH/34-115,(P93611_WHEAT/84-166,((PRF1_LYCES/261-343,Q9SET1_ARATH/222-304),(((P93274_MALDO/2-73,O23370_ARATH/181-264),Q41848_MAIZE/215-296),(((P93705_DAUCA/264-345,Q06763_SOYBN/68-149),(Q96232_ASPOF/101-182,Q9SKI0_ARATH/208-289)),Q9SXE7_ARATH/212-293)))))),((Q39100_ARATH/48-126,(CCDP_MAIZE/48-127,Q42474_ORYSA/65-146)),(14KD_DAUCA/54-136,Q43522_LYCES/127-207))),(Q9ZTW2_FRAAN/73-155,(Q42487_POPNI/58-140,(((O82439_ARATH/25-107,Q9SUX3_ARATH/50-132),O65369_ARATH/55-137),(Q39176_ARATH/85-167,Q9S7U3_ARATH/46-128)))))),Q40721_ORYSA/52-133)))),AMP1_ALLCE/31-116),NLTP_VIGUN/34-99)),(Q9STH5_ARATH/42-113,O24486_PINRA/39-97))),((Q9SHA0_ARATH/27-109,(Q43496_LYCES/28-101,(Q9SRS1_ARATH/32-105,Q9SUZ2_ARATH/48-121))),((((O64864_ARATH/36-113,((O22272_ARATH/48-125,Q9ZQI8_ARATH/27-105),Q9ZVC7_ARATH/40-120)),Q9SA59_ARATH/25-103),O22110_PICAB/25-104),Q9SI70_ARATH/29-101))),(((((A9_ARATH/27-87,A9_BRANA/32-92),MEN8_SILLA/38-98),FIL1_ANTMA/31-90),108_LYCES/35-99),(MC1_PINRA/28-88,(LIM1_LILLO/29-88,(Q9SBW9_MAIZE/43-101,(YY1_ORYSA/31-94,ZM33_MAIZE/45-108)))))),((((PUIA_WHEAT/48-138,PUIB_WHEAT/50-140),(P93513_9POAL/63-154,Q9SC06_TRIMO/34-125)),(((GLU2_MAIZE/128-213,ZEB2_MAIZE/86-172),Q00318_COILA/103-188),((PRO2_ORYSA/47-143,PRO7_ORYSA/41-137),(((GDB1_WHEAT/134-288,(HOR1_HORVU/143-282,GDB3_WHEAT/87-228)),(GLTA_WHEAT/197-341,P93794_WHEAT/195-344)),(((GDA2_WHEAT/143-280,((GDA0_WHEAT/146-275,GDA8_WHEAT/46-175),GDA5_WHEAT/152-306)),GDA6_WHEAT/155-283),(HOG3_HORVU/142-276,((Q09071_AVESA/48-166,(AVE3_AVESA/69-210,Q09072_AVESA/74-212)),((Q41320_SECCE/55-178,(GDB2_WHEAT/184-310,(GDBX_WHEAT/171-285,Q41543_WHEAT/137-262))),HOG1_HORVU/166-288)))))))),((((((Q9XHP1_SESIN/54-141,(Q39649_9ROSI/55-139,2SS_RICCO/61-155)),(((Q39787_GOSHI/36-131,2SS8_HELAN/49-139),(2SS_BEREX/40-137,P93198_9ROSI/39-132)),2SS_RICCO/162-256)),((2SS5_HELAN/190-290,((2SS1_ARATH/59-153,2SS2_ARATH/58-158),(Q41168_RAPSA/29-141,(2SSE_BRANA/60-174,2SS1_BRANA/16-122)))),(2SS5_HELAN/53-148,Q39928_HELAN/52-143))),((2SS_SOYBN/43-152,Q9SQG5_ARAHY/31-120),(((O64930_PSEMZ/43-158,O64931_PSEMZ/44-155),(((Q40996_PINST/48-156,Q40995_PINST/69-175),(2SSL_PICGL/52-156,Q40997_PINST/58-160)),O64929_PSEMZ/42-147)),O81410_PICGL/53-146))),PRO1_ORYSA/43-134),GL19_ORYSA/48-178))),((IAA2_HORVU/37-144,(IAA1_WHEAT/6-115,IAA2_WHEAT/7-113)),(IAA1_HORVU/20-131,(((Q40655_ORYSA/42-152,O49178_ORYSA/42-149),RA17_ORYSA/39-149),(Q40652_ORYSA/41-153,Q40654_ORYSA/41-149))))),IAA4_SORBI/7-111),IAA5_SORBI/4-106),(IAAE_HORVU/29-137,(IAAT_ELECO/6-114,ITRF_MAIZE/34-143))),(IA16_WHEAT/30-134,IA03_WHEAT/43-159)),IA01_WHEAT/30-140,IAAA_HORVU/30-140);
((((((((((((((((((((NLTP_HELAN/28-112:0.07539,O24440_PHAVU/29-112:0.24330):0.06195,((((((Q39332_BRANA/28-112:0.43526,((NLTPA_BRAOT/29-114:0.14041,((NLTP1_BRANA/29-113:0.16350,NLTP5_ARATH/29-114:0.35555):0.07173,NLTP1_ARATH/29-114:0.10257):0.09176):0.09268,Q9ZUK6_ARATH/29-118:0.40247):0.10163):0.04446,Q9ZSL7_BRANA/27-108:0.22506):0.14478,SCA_LILLO/25-109:0.38231):0.05077,NLTP3_PRUDU/33-119:0.28175):0.06224,(NLTP6_GOSHI/32-116:0.36529,NLTP1_GOSHI/27-112:0.13305):0.08400):0.04041,((NLTP_DAUCA/30-116:0.25564,NLTP_GERHY/28-112:0.30285):0.09824,NLTP1_PRUAR/3-87:0.18320):0.09782):0.00000):0.07114,(NLTP_CICAR/27-111:0.22865,(((NLTP1_TOBAC/27-110:0.15464,O24038_LYCPN/27-110:0.12433):0.09403,((Q9SDS4_CAPAN/19-102:0.47205,Q9SDS2_CAPAN/27-110:0.20455):0.04146,NLTP1_LYCES/27-110:0.03764):0.04145):0.18982,(NLTP_BETVU/29-113:0.18304,NLTP_SPIOL/30-113:0.13609):0.08289):0.12124):0.02169):0.04796,(((NLTP_AMACA/4-90:0.29696,Q9ZPW9_ARATH/28-112:0.57086):0.24459,((NLTP_ELECO/4-90:0.23400,(NLTP1_ORYSA/28-112:0.02096,((NLTP1_HORVU/29-113:0.09353,NLTP1_WHEAT/26-110:0.21300):0.26623,NLTP4_ORYSA/10-95:0.31404):0.14071):0.07219):0.06211,(NLTP8_HORVU/29-111:0.19530,(NLT41_HORVU/29-111:0.04436,(Q42848_HORVU/33-118:0.29782,NLTP3_HORVU/29-114:0.00000):0.17760):0.04639):0.14248):0.05580):0.08240,NLTP5_ORYSA/28-113:0.46960):0.06655):0.08152,(NLTPA_RICCO/3-88:0.00000,NLTPB_RICCO/3-88:0.35400):0.57629):0.07449,NLTP_PINTA/34-119:0.53100):0.11114,Q9SES6_HORVU/32-117:0.60954):0.01757,((((NLTPC_RICCO/28-112:0.14270,NLTP_STRHE/10-89:0.29956):0.56776,((NLT11_PARJU/4-91:0.42210,NLT21_PARJU/35-121:0.30166):0.22883,O49116_ARATH/29-125:1.00021):0.13900):0.07545,NLTP6_AMBAR/30-113:0.53367):0.20345,((O24355_SILLA/25-110:0.69350,Q40453_TOBAC/25-114:0.39180):0.12141,O24485_PINRA/36-122:0.76068):0.09822):0.18596):0.27023,(O49644_ARATH/39-110:0.57453,O49648_ARATH/34-105:0.26585):0.84397):0.36678,(Q41126_PHAVU/30-102:0.73092,(O24101_MEDTR/31-102:0.56129,(O65561_ARATH/29-103:0.58344,O81872_ARATH/32-107:0.36637):0.69656):0.22125):0.17977):0.12771,(((((((Q41378_9ASTR/24-89:0.26076,Q42392_ZINEL/30-95:0.16986):0.09929,Q42158_ARATH/29-94:0.27486):0.07823,NLTP2_PRUAR/3-68:0.29724):0.07759,(P93191_HORVU/31-96:0.23333,(Q9XF30_ORYSA/41-111:0.56664,(Q40631_ORYSA/30-95:0.22464,(O81135_HORVU/27-92:0.54295,NLTP2_HORVU/37-102:0.21867):0.14402):0.15881):0.13834):0.22683):0.03636,O64431_BRACM/21-86:0.33666):0.08982,((((Q9SUV8_ARATH/28-104:0.49743,Q9SUW7_ARATH/37-117:0.61875):0.39304,(Q9SUX0_ARATH/37-116:0.81772,(HPSE_SOYBN/8-77:0.67851,((((O81318_ARATH/317-399:0.41067,Q9ST25_MAIZE/51-132:0.28787):0.12310,(Q39574_CATRO/55-137:0.16683,(Q40335_MEDSA/84-165:0.20536,(Q41125_PHAVU/45-126:0.23092,Q42044_ARATH/52-133:0.08325):0.01298):0.05741):0.03751):0.04845,(((O65368_ARATH/32-112:0.31245,(Q9SU32_ARATH/34-115:0.47742,(P93611_WHEAT/84-166:0.33381,((PRF1_LYCES/261-343:0.12561,Q9SET1_ARATH/222-304:0.14309):0.04268,(((P93274_MALDO/2-73:0.24652,O23370_ARATH/181-264:0.14498):0.01363,Q41848_MAIZE/215-296:0.34700):0.20318,(((P93705_DAUCA/264-345:0.13508,Q06763_SOYBN/68-149:0.14407):0.18899,(Q96232_ASPOF/101-182:0.07636,Q9SKI0_ARATH/208-289:0.19209):0.04088):0.10389,Q9SXE7_ARATH/212-293:0.18725):0.14808):0.03642):0.09736):0.27923):0.06846):0.09544,((Q39100_ARATH/48-126:0.16881,(CCDP_MAIZE/48-127:0.20435,Q42474_ORYSA/65-146:0.21722):0.20237):0.09302,(14KD_DAUCA/54-136:0.16834,Q43522_LYCES/127-207:0.18562):0.04448):0.01435):0.03042,(Q9ZTW2_FRAAN/73-155:0.15973,(Q42487_POPNI/58-140:0.11367,(((O82439_ARATH/25-107:0.19144,Q9SUX3_ARATH/50-132:0.25994):0.10238,O65369_ARATH/55-137:0.10280):0.06938,(Q39176_ARATH/85-167:0.18491,Q9S7U3_ARATH/46-128:0.14145):0.05173):0.03650):0.02152):0.10388):0.03290):0.07739,Q40721_ORYSA/52-133:0.16048):0.23167):0.14210):0.17881):0.28698,AMP1_ALLCE/31-116:1.81314):1.04844,NLTP_VIGUN/34-99:0.00000):0.14340):0.38879,(Q9STH5_ARATH/42-113:0.79385,O24486_PINRA/39-97:0.59108):0.25725):0.14141):0.14046,((Q9SHA0_ARATH/27-109:0.94652,(Q43496_LYCES/28-101:0.40185,(Q9SRS1_ARATH/32-105:0.29678,Q9SUZ2_ARATH/48-121:0.19927):0.09345):0.56663):0.27689,((((O64864_ARATH/36-113:0.77816,((O22272_ARATH/48-125:0.73416,Q9ZQI8_ARATH/27-105:0.31988):0.16597,Q9ZVC7_ARATH/40-120:0.68102):0.23923):0.17854,Q9SA59_ARATH/25-103:0.46313):0.18641,O22110_PICAB/25-104:0.65418):0.02546,Q9SI70_ARATH/29-101:1.01671):0.05798):0.08343):0.27686,(((((A9_ARATH/27-87:0.13775,A9_BRANA/32-92:0.11708):0.50844,MEN8_SILLA/38-98:0.22846):0.12810,FIL1_ANTMA/31-90:0.15633):0.01521,108_LYCES/35-99:0.31267):0.22048,(MC1_PINRA/28-88:0.66807,(LIM1_LILLO/29-88:0.44541,(Q9SBW9_MAIZE/43-101:0.46706,(YY1_ORYSA/31-94:0.17615,ZM33_MAIZE/45-108:0.38165):0.17836):0.22644):0.07895):0.13676):0.18080):0.64563,((((PUIA_WHEAT/48-138:0.44040,PUIB_WHEAT/50-140:0.40681):0.18120,(P93513_9POAL/63-154:0.16936,Q9SC06_TRIMO/34-125:0.23625):0.29472):0.79417,(((GLU2_MAIZE/128-213:0.11200,ZEB2_MAIZE/86-172:0.18244):0.08080,Q00318_COILA/103-188:0.07792):0.58268,((PRO2_ORYSA/47-143:0.20590,PRO7_ORYSA/41-137:0.04119):0.66067,(((GDB1_WHEAT/134-288:0.05059,(HOR1_HORVU/143-282:0.11159,GDB3_WHEAT/87-228:0.04842):0.01671):0.00452,(GLTA_WHEAT/197-341:0.02790,P93794_WHEAT/195-344:0.00939):0.09203):0.26619,(((GDA2_WHEAT/143-280:0.05374,((GDA0_WHEAT/146-275:0.00858,GDA8_WHEAT/46-175:0.10446):0.04495,GDA5_WHEAT/152-306:0.06386):0.01017):0.00259,GDA6_WHEAT/155-283:0.17002):0.32315,(HOG3_HORVU/142-276:0.34678,((Q09071_AVESA/48-166:0.21217,(AVE3_AVESA/69-210:0.04730,Q09072_AVESA/74-212:0.08061):0.13043):0.07432,((Q41320_SECCE/55-178:0.32048,(GDB2_WHEAT/184-310:0.06956,(GDBX_WHEAT/171-285:0.07958,Q41543_WHEAT/137-262:0.06578):0.01147):0.03179):0.09533,HOG1_HORVU/166-288:0.25463):0.08070):0.01382):0.04151):0.09842):0.27203):0.08603):0.22119):0.21407,((((((Q9XHP1_SESIN/54-141:0.67134,(Q39649_9ROSI/55-139:0.44383,2SS_RICCO/61-155:0.90066):0.15465):0.04271,(((Q39787_GOSHI/36-131:0.77185,2SS8_HELAN/49-139:0.95272):0.19596,(2SS_BEREX/40-137:0.55138,P93198_9ROSI/39-132:0.27405):0.07071):0.10143,2SS_RICCO/162-256:0.64632):0.19804):0.17291,((2SS5_HELAN/190-290:0.53721,((2SS1_ARATH/59-153:0.06849,2SS2_ARATH/58-158:0.32261):0.08326,(Q41168_RAPSA/29-141:0.04835,(2SSE_BRANA/60-174:0.14845,2SS1_BRANA/16-122:0.18873):0.09403):0.25229):0.61619):0.08257,(2SS5_HELAN/53-148:0.11964,Q39928_HELAN/52-143:0.13003):0.36755):0.20064):0.11942,((2SS_SOYBN/43-152:0.51322,Q9SQG5_ARAHY/31-120:0.41238):0.66820,(((O64930_PSEMZ/43-158:0.23038,O64931_PSEMZ/44-155:0.20088):0.02143,(((Q40996_PINST/48-156:0.26233,Q40995_PINST/69-175:0.11832):0.08912,(2SSL_PICGL/52-156:0.08957,Q40997_PINST/58-160:0.23670):0.05322):0.06621,O64929_PSEMZ/42-147:0.18603):0.04161):0.14498,O81410_PICGL/53-146:0.22086):0.49340):0.26481):0.19946,PRO1_ORYSA/43-134:0.77786):0.15726,GL19_ORYSA/48-178:0.88733):0.06013):0.45072):0.40827,((IAA2_HORVU/37-144:0.24530,(IAA1_WHEAT/6-115:0.47616,IAA2_WHEAT/7-113:0.04195):0.13415):0.30972,(IAA1_HORVU/20-131:0.30650,(((Q40655_ORYSA/42-152:0.00000,O49178_ORYSA/42-149:0.71389):0.09834,RA17_ORYSA/39-149:0.17728):0.04926,(Q40652_ORYSA/41-153:0.09883,Q40654_ORYSA/41-149:0.23800):0.06855):0.21694):0.10972):0.51304):0.67616,IAA4_SORBI/7-111:0.41390):0.35955,IAA5_SORBI/4-106:0.74960):0.07785,(IAAE_HORVU/29-137:0.40455,(IAAT_ELECO/6-114:0.17895,ITRF_MAIZE/34-143:0.26166):0.06521):0.11993):0.57816,(IA16_WHEAT/30-134:0.14478,IA03_WHEAT/43-159:0.77401):0.21388):0.30608,IA01_WHEAT/30-140:0.10687,IAAA_HORVU/30-140:0.13965);