EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00188 - SCP)
SCP-like extracellular protein
(Pfam reference: accession no. PF00188)
(Interpro reference: accession no. IPR001283)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
298 sequences @ 283 aa
(ave. pairwise identity: 0.25)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 180.02)
nucleotides
(available for above)
289 sequences @ 849 bp
(ave. pairwise identity: 0.39)
New Hampshire format
(total tree length: 118.99)
amino acids, restricted set
(corresp. to available nt seqs)
289 sequences @ 283 aa
(ave. pairwise identity: 0.25)
New Hampshire format
(total tree length: 177.43)